line_profiler
Apache Arrow
line_profiler | Apache Arrow | |
---|---|---|
17 | 75 | |
2,481 | 13,562 | |
1.3% | 1.4% | |
8.2 | 10.0 | |
8 days ago | 2 days ago | |
Python | C++ | |
GNU General Public License v3.0 or later | Apache License 2.0 |
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line_profiler
- Ask HN: C/C++ developer wanting to learn efficient Python
- New version of line_profiler: 4.1.0
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Making Python 100x faster with less than 100 lines of Rust
LineProfiler is the best tool to learn how to write performant Python and code optimization.
https://github.com/pyutils/line_profiler
You can literally see the hot spot of your code, then you can grind different algorithms or change the whole architecture to make it faster.
For example replace short for loops to list comprehensions, vectorize all numpy operations (only vectorize partially do not help the issue), using 'not any()' instead or 'all()' for boolean, etc.
Doing this for like 2 weeks, basically you can automatically recognized most bad code patterns in a glance.
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Why is my Pubmed plant search app so slow?
You may want to try using a package like line_profiler to narrow down where the time is spent.
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How to make nested for loops run faster
When tuning for performance, always measure. Never assume you know where the slow parts are. Run a line profiler and see where all the time is actually going.
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I'm working on a world map generator, but I have one function in particular that is very slow and keeping me from being able to scale my maps to as large as I'd like... is there a way that I can optimize this depth first search function, or another way of grouping contiguous cells based on criteria?
Either way I would highly recommend running a profiler on your code to see where the program is spending most of its time. line_profiler is a very nice one, as it shows you execution time for each line.
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Is it possible to make a function to check how many lines of code have been executed in the program so far (including said function’s lines)?
There are dedicated tools like line_profiler for python - if this doesn't do exactly what you need it can be easily modified.
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Why does sklearn.Pipeline with regex outperform spacy for text preprocessing?
It's surprising to me that an sklearn pipeline and a spacy pipeline both doing simple regexing are vastly different in performance. I would go one layer deeper with measurement with something like line_profiler, which I've used to great effect to get line-by-line perf stats. This should illuminate why.
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Hot profiling for Python
This looks really nice! Does it use line_profiler or is it a different implementation for the profiling? Either way the interface is fantastic!
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Profiling and Analyzing Performance of Python Programs
# https://github.com/pyutils/line_profiler pip install line_profiler kernprof -l -v some-code.py # This might take a while... Wrote profile results to some-code.py.lprof Timer unit: 1e-06 s Total time: 13.0418 s File: some-code.py Function: exp at line 3 Line # Hits Time Per Hit % Time Line Contents ============================================================== 3 @profile 4 def exp(x): 5 1 4.0 4.0 0.0 getcontext().prec += 2 6 1 0.0 0.0 0.0 i, lasts, s, fact, num = 0, 0, 1, 1, 1 7 5818 4017.0 0.7 0.0 while s != lasts: 8 5817 1569.0 0.3 0.0 lasts = s 9 5817 1837.0 0.3 0.0 i += 1 10 5817 6902.0 1.2 0.1 fact *= i 11 5817 2604.0 0.4 0.0 num *= x 12 5817 13024902.0 2239.1 99.9 s += num / fact 13 1 5.0 5.0 0.0 getcontext().prec -= 2 14 1 2.0 2.0 0.0 return +s
Apache Arrow
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How moving from Pandas to Polars made me write better code without writing better code
In comes Polars: a brand new dataframe library, or how the author Ritchie Vink describes it... a query engine with a dataframe frontend. Polars is built on top of the Arrow memory format and is written in Rust, which is a modern performant and memory-safe systems programming language similar to C/C++.
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From slow to SIMD: A Go optimization story
I learned yesterday about GoLang's assembler https://go.dev/doc/asm - after browsing how arrow is implemented for different languages (my experience is mainly C/C++) - https://github.com/apache/arrow/tree/main/go/arrow/math - there are bunch of .S ("asm" files) and I'm still not able to comprehend how these work exactly (I guess it'll take more reading) - it seems very peculiar.
The last time I've used inlined assembly was back in Turbo/Borland Pascal, then bit in Visual Studio (32-bit), until they got disabled. Then did very little gcc with their more strict specification (while the former you had to know how the ABI worked, the latter too - but it was specced out).
Anyway - I wasn't expecting to find this in "Go" :) But I guess you can always start with .go code then produce assembly (-S) then optimize it, or find/hire someone to do it.
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Time Series Analysis with Polars
One is related to the heritage of being built around the NumPy library, which is great for processing numerical data, but becomes an issue as soon as the data is anything else. Pandas 2.0 has started to bring in Arrow, but it's not yet the standard (you have to opt-in and according to the developers it's going to stay that way for the foreseeable future). Also, pandas's Arrow-based features are not yet entirely on par with its NumPy-based features. Polars was built around Arrow from the get go. This makes it very powerful when it comes to exchanging data with other languages and reducing the number of in-memory copying operations, thus leading to better performance.
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TXR Lisp
IMO a good first step would be to use the txr FFI to write a library for Apache arrow: https://arrow.apache.org/
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3D desktop Game Engine scriptable in Python
https://www.reddit.com/r/O3DE/comments/rdvxhx/why_python/ :
> Python is used for scripting the editor only, not in-game behaviors.
> For implementing entity behaviors the only out of box ways are C++, ScriptCanvas (visual scripting) or Lua. Python is currently not available for implementing game logic.
C++, Lua, and Python all implement CFFI (C Foreign Function Interface) for remote function and method calls.
"Using CFFI for embedding" https://cffi.readthedocs.io/en/latest/embedding.html :
> You can use CFFI to generate C code which exports the API of your choice to any C application that wants to link with this C code. This API, which you define yourself, ends up as the API of a .so/.dll/.dylib library—or you can statically link it within a larger application.
Apache Arrow already supports C, C++, Python, Rust, Go and has C GLib support Lua:
https://github.com/apache/arrow/tree/main/c_glib/example/lua :
> Arrow Lua example: All example codes use LGI to use Arrow GLib based bindings
pyarrow.from_numpy_dtype:
- Show HN: Udsv.js – A faster CSV parser in 5KB (min)
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Interacting with Amazon S3 using AWS Data Wrangler (awswrangler) SDK for Pandas: A Comprehensive Guide
AWS Data Wrangler is a Python library that simplifies the process of interacting with various AWS services, built on top of some useful data tools and open-source projects such as Pandas, Apache Arrow and Boto3. It offers streamlined functions to connect to, retrieve, transform, and load data from AWS services, with a strong focus on Amazon S3.
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Cap'n Proto 1.0
Worker should really adopt Apache Arrow, which has a much bigger ecosystem.
https://github.com/apache/arrow
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C++ Jobs - Q3 2023
Apache Arrow
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Wheel fails for pyarrow installation
I am aware of the fact that there are other posts about this issue but none of the ideas to solve it worked for me or sometimes none were found. The issue was discussed in the wheel git hub last December and seems to be solved but then it seems like I'm installing the wrong version? I simply used pip3 install pyarrow, is that wrong?
What are some alternatives?
SnakeViz - An in-browser Python profile viewer
Airflow - Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
memory_profiler - Monitor Memory usage of Python code
h5py - HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
reloadium - Hot Reloading and Profiling for Python
Apache Spark - Apache Spark - A unified analytics engine for large-scale data processing
pprofile - Line-granularity, thread-aware deterministic and statistic pure-python profiler
FlatBuffers - FlatBuffers: Memory Efficient Serialization Library
psutil - Cross-platform lib for process and system monitoring in Python
polars - Dataframes powered by a multithreaded, vectorized query engine, written in Rust
prometeo - An experimental Python-to-C transpiler and domain specific language for embedded high-performance computing
ClickHouse - ClickHouse® is a free analytics DBMS for big data