pseqsid
Calculates pairwise sequence identity, similarity and normalized similarity score of proteins in a multiple sequence alignment. (by amaurypm)
gaoya
Locality Sensitive Hashing (by serega)
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pseqsid
Posts with mentions or reviews of pseqsid.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-09-16.
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pseqsid: an open-source command line utility to calculate protein sequence identity and similarity
Or you can download the crate from GitHub and build it yourself.
gaoya
Posts with mentions or reviews of gaoya.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-07.
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Vectors are over, hashes are the future
https://github.com/serega/gaoya
HNSW index is slow to construct, so it is best suited for search or recommendation engines where you build the index and serve. For workloads where you continuously mutate the index, like streaming clustering/deduplication LSH outperforms HNSW.