poly
Django
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poly | Django | |
---|---|---|
24 | 484 | |
648 | 76,672 | |
2.5% | 1.1% | |
8.2 | 9.8 | |
about 1 month ago | 7 days ago | |
Go | Python | |
MIT License | BSD 3-clause "New" or "Revised" License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
poly
- Looking for an Open Source project to participate in for Google Summer of Code
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GitHub Accelerator: our first cohort and what's next
- https://github.com/TimothyStiles/poly: Poly is a fast, well tested Go package for engineering organisms.
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These 20 startups are in 1st ever batch of GitHub OS Accelerator
Poly: Fast Go package for engineering organisms
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Ask HN: Burnt out from big tech. What's next?
You might want to look at computational biology. Jim Allison won the Nobel Prize back in 2018 for his work on immunotherapy for cancer and there's a lot of basic research work to be done to perfect this approach. Epigenetic clocks are really interesting too (see Steve Horvath's work). Also, there's synthetic biology, where you could, for example, explore this package that's written in Go: https://github.com/TimothyStiles/poly
- Any corner cases for Needleman-Wunsch that should be tested?
- Where can I find well-written go code to learn from?
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High-performance language recommendation
Check out poly. It’s written in go and I’m using it for one of my projects too. The goal is that we should have high performance libraries that we can use knowing what people are working on the forks will give the community a leg up.
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How is GO used in bioinfo?
The most popular bioinformatic package I've seen in go is poly.
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Software engineers: consider working on genomics
I write synthetic biology software for a living and maintain this open source, Go package for engineering DNA that has high test coverage and a nice little dev community around it.
https://github.com/TimothyStiles/poly
A large part of my project's community are devs that want to get into the field but can't tolerate the ridiculously low pay, laughably bad management, disrespect, and what amounts to 40+ years of technical debt that's endemic to biotech software.
I've had companies here in the Bay Area offer me 100K a year with a straight face. I've had companies during interview tell me they're looking for someone to help, "set up GitHub". I've seen job listings for low paid web dev positions require applicants to have PhDs.
The reality is that except for a growing handful of places management straight up won't know the difference between IT and software engineers. It's what I call the naive buyers problem.
The demand for software engineers in biotech is generated by naive buyers that don't know what they need, why they need it, or how to get it.
Benchling and Recursion Pharmaceuticals have reputations in the industry of paying, "standard software salaries". So do the research divisions at places like deepmind/microsoft/google but in my experience there's even new multi-billion dollar institutes where senior management has never even heard the term devops.
Most places advertise for "data scientist", positions or some analog, instead of software engineers. This is mostly because upper management has never met an actual practicing software engineer in a professional setting. Many come from academia where the culture and work requirements heavily disincentivize standard software engineering practices.
It's also not uncommon for a biotech company to either have a very under qualified CTO whose main programming experience is what they learned doing ML research like stuff during their PhD or not even have one at all which has huge downstream consequences.
This week a software engineer trying to make the switch to biotech actually DM'd me to ask why they were seeing a ton of data science / ML job positions but no software engineering / devops positions.
They were worried that these companies were trying to save on costs by forcing their data scientists to create infrastructure but it's actually worse than that. Most of these companies aren't even aware that there's supposed to be infrastructure.
Despite all of this the future is looking better and I'm starting to find new companies and positions that are well... reasonable. I learned about this thread from a friend at a party last night that works at one of these companies. There's a small, strong new wave of companies and developers out there pushing biotech software forward. Hopefully some (including myself) make it big while pushing the idea that better tech equals better biotech.
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Ask HN: What interesting problems are you working on? ( 2022 Edition)
It is more like the X Y Z W. However, the X Y Z W bits I am working on as well (https://github.com/TimothyStiles/poly , https://github.com/TimothyStiles/allbase , trilo.bio, freegenes.org). Going for fully automated "make bacterium X produce molecule Y", but still a while away (but surprisingly not THAT far off)
Django
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AutoCodeRover resolves 22% of real-world GitHub in SWE-bench lite
>As an example, AutoCodeRover successfully fixed issue #32347 of Django.
This bug was fixed three years ago in a one-line change.[0] Presumably the fix was already in the training data.
[0] https://github.com/django/django/pull/13933
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An Introduction to Testing with Django for Python
You should not test Django's own code — it's already been tested. For example, you don't need to write a test that checks if an object is retrieved with get_object_or_404 — Django's testing suite already has that covered.
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Django Hello, World
Django is a high-level Python web framework that prioritizes rapid development with clear, reusable code. Its batteries-included approach supplies most of what you need for complex database-driven websites without turning to external libraries and dealing with security and maintenance risks. In this tutorial, we will build a traditional "Hello, World" application while introducing you to the core concepts behind Django.
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Where can I create a website for free (no domain needed, basic server hosting, not something like Wix)
If you want to get into Python web development then Django can be a good place to start. https://www.djangoproject.com/
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I like this docstring from django source code
If found this:
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No changes detected with MAKEMIGRATION command after moving to new DataBase
Django's auth and session migration files are included with Django at https://github.com/django/django/tree/b287af5dc954628d4b336aefc5027b2edceee64b/django/contrib/auth/migrations and https://github.com/django/django/tree/b287af5dc954628d4b336aefc5027b2edceee64b/django/contrib/sessions/migrations
- What should I learn
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The DevRel Digest November 2023: DevRel You Should Know Part One and Why I Will Never, Ever Leave Developer Relations
Dawn Wages’ name came up a few times in my call for nominations, and it’s easy to see why! Dawn is a Python Community Advocate at Microsoft. She is active in the Django community with an emphasis on people of color and queer people in tech. Dawn’s impressive resume includes OSS maintainer, member of the Wagtail Core Team, DjangoCon '21, '22, '23 Sponsorship Chair, volunteer for Django Girls, and DjangoCon Africa 2021 Sponsorship Chair.
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CodeCraze🚀 - create your own blog in Django | Part 0 | Project Setup
In this Article, we create our own blog called CodeCraze using Django, a popular web framework written in python. Django is designed to help developers to rapidly build their web applications from concept to completion in an efficient way. Its a batteries included framework which provides out of the box functionalities such as ORM, API Integration, authentication, form handling & many more...
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Implementing Role-Based Access Control in Django
There are many models of access control, however, in this guide, we are going to focus on Role Based Access Control (RBAC) and how to implement it in Django.
What are some alternatives?
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Nest - A progressive Node.js framework for building efficient, scalable, and enterprise-grade server-side applications with TypeScript/JavaScript 🚀
pg-mem - An in memory postgres DB instance for your unit tests
fastapi - FastAPI framework, high performance, easy to learn, fast to code, ready for production
linaria - Zero-runtime CSS in JS library
Flask - The Python micro framework for building web applications.
seq - A high-performance, Pythonic language for bioinformatics
Masonite - The Modern And Developer Centric Python Web Framework. Be sure to read the documentation and join the Discord channel for questions: https://discord.gg/TwKeFahmPZ
m4b-tool - m4b-tool is a command line utility to merge, split and chapterize audiobook files such as mp3, ogg, flac, m4a or m4b
AIOHTTP - Asynchronous HTTP client/server framework for asyncio and Python
full_spectrum_bioinformatics - An open-access bioinformatics text
Nuxt.js - Nuxt is an intuitive and extendable way to create type-safe, performant and production-grade full-stack web apps and websites with Vue 3. [Moved to: https://github.com/nuxt/nuxt]