ploomber
guildai
ploomber | guildai | |
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121 | 16 | |
3,380 | 856 | |
0.5% | 0.1% | |
7.4 | 8.8 | |
25 days ago | 9 months ago | |
Python | Python | |
Apache License 2.0 | Apache License 2.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
ploomber
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Show HN: JupySQL – a SQL client for Jupyter (ipython-SQL successor)
- One-click sharing powered by Ploomber Cloud: https://ploomber.io
Documentation: https://jupysql.ploomber.io
Note that JupySQL is a fork of ipython-sql; which is no longer actively developed. Catherine, ipython-sql's creator, was kind enough to pass the project to us (check out ipython-sql's README).
We'd love to learn what you think and what features we can ship for JupySQL to be the best SQL client! Please let us know in the comments!
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Runme – Interactive Runbooks Built with Markdown
For those who don't know, Jupyter has a bash kernel: https://github.com/takluyver/bash_kernel
And you can run Jupyter notebooks from the CLI with Ploomber: https://github.com/ploomber/ploomber
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Rant: Jupyter notebooks are trash.
Develop notebook-based pipelines
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Who needs MLflow when you have SQLite?
Fair point. MLflow has a lot of features to cover the end-to-end dev cycle. This SQLite tracker only covers the experiment tracking part.
We have another project to cover the orchestration/pipelines aspect: https://github.com/ploomber/ploomber and we have plans to work on the rest of features. For now, we're focusing on those two.
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New to large SW projects in Python, best practices to organize code
I recommend taking a look at the ploomber open source. It helps you structure your code and parameterize it in a way that's easier to maintain and test. Our blog has lots of resources about it from testing your code to building a data science platform on AWS.
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A three-part series on deploying a Data Science Platform on AWS
Developing end-to-end data science infrastructure can get complex. For example, many of us might have struggled to try to integrate AWS services and deal with configuration, permissions, etc. At Ploomber, we’ve worked with many companies in a wide range of industries, such as energy, entertainment, computational chemistry, and genomics, so we are constantly looking for simple solutions to get them started with Data Science in the cloud.
- Ploomber Cloud - Parametrizing and running notebooks in the cloud in parallel
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Is Colab still the place to go?
If you like working locally with notebooks, you can run via the free tier of ploomber, that'll allow you to get the Ram/Compute you need for the bigger models as part of the free tier. Also, it has the historical executions so you don't need to remember what you executed an hour later!
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Alternatives to nextflow?
It really depends on your use cases, I've seen a lot of those tools that lock you into a certain syntax, framework or weird language (for instance Groovy). If you'd like to use core python or Jupyter notebooks I'd recommend Ploomber, the community support is really strong, there's an emphasis on observability and you can deploy it on any executor like Slurm, AWS Batch or Airflow. In addition, there's a free managed compute (cloud edition) where you can run certain bioinformatics flows like Alphafold or Cripresso2
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Saving log files
That's what we do for lineage with https://ploomber.io/
guildai
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guildai VS cascade - a user suggested alternative
2 projects | 5 Dec 2023
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[D] Who here are convinced that they have a really good setup that keeps track of their ML experiments?
Experiment tracking in DvC is implemented using git to store snapshots of a project and related artifacts. You might take a look at Guild AI's support for DvC, which is tightly integrated with DvC stages. You can run any of the stages defined for a project and you get a properly isolated run (each run is a project copy to ensure that you're not corrupting the run if you modify files while it's running - as well as properly supporting concurrent runs). Once you have runs in Guild, you can use any number of tools to study, compare, export, etc.
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[D] Deploying SOTA models into my own projects
I built an experiment tracking tool (Guild AI) that focuses on code/model reuse and so this question is dear to my heart :) Best of luck!
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[P] I reviewed 50+ open-source MLOps tools. Here’s the result
I'm not aware of experiment tracking in Jupyter notebooks themselves. Guild AI is able to run notebooks as experiments however.
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[D] What MLOps platform do you use, and how helpful are they?
Disclosure - I'm the author of Guild AI so take this for the biased opinion that it is.
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[N] Experiment tracking with DvC and Guild AI
I'm the author of Guild AI (open source experiment tracking). For some time now Guild users have asked for DvC support. This is now available as a pre-release.
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[D] Why doesn’t your team use an experiment tracking tool?
Guild AI now has support for running DvC stages as experiments. DvC uses git under the covers to manage project state for each experiment, along with the experiment results. Guild doesn't touch your git repo and instead copies your project source to a new run directory. This ensures that you have a correct record of your experiment without churning your project state.
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Data Science toolset summary from 2021
Guild.ai - https://guild.ai/
- [D] How do you ensure reproducibility?
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[D] I'm new and scrappy. What tips do you have for better logging and documentation when training or hyperparameter training?
Use guild and pytorch-lightning. Make it easy for new contributors to get your data by using dvc as a data access tool.
What are some alternatives?
Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.
MLflow - Open source platform for the machine learning lifecycle
papermill - 📚 Parameterize, execute, and analyze notebooks
aim - Aim 💫 — An easy-to-use & supercharged open-source experiment tracker.
dagster - An orchestration platform for the development, production, and observation of data assets.
dvc - 🦉 ML Experiments and Data Management with Git
pytorch-lightning - Build high-performance AI models with PyTorch Lightning (organized PyTorch). Deploy models with Lightning Apps (organized Python to build end-to-end ML systems). [Moved to: https://github.com/Lightning-AI/lightning]
argo - Workflow Engine for Kubernetes
labml - 🔎 Monitor deep learning model training and hardware usage from your mobile phone 📱
wandb - 🔥 A tool for visualizing and tracking your machine learning experiments. This repo contains the CLI and Python API.