pRIblast
gnu-parallel
| pRIblast | gnu-parallel | |
|---|---|---|
| 1 | 23 | |
| 2 | 25 | |
| - | - | |
| 4.7 | 10.0 | |
| 7 months ago | about 9 years ago | |
| C++ | Perl | |
| MIT License | GNU General Public License v3.0 only |
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pRIblast
gnu-parallel
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SQL query execution idea
You can use GNU Parallel (https://www.gnu.org/software/parallel/) to run command-line clients with all of those queries. You can set up the upper limit of simultaneous clients run, and this will automatically handle all possible parallelism.
- Parallel – shell tool for executing jobs in parallel using one or more computers
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Distcc: A fast, free distributed C/C++ compiler
Some other multi machine options that have worked well for me, well beyond just compilation of C/C++ on multiple machines with multiple cores.
1) set up passwordless, ssh.
and
2) use the gnu parallel. https://www.gnu.org/software/parallel/
gnu parallel is super flexible, very useful.
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Peplum: F/OSS distributed parallel computing and supercomputing at Home with Ruby infrastructure
How does this stack up againg GNU parallel? If you just wanna parallelize CLI work-loads (like nmap), parallel should be easier, I guess.
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Search in your Jupyter notebooks from the CLI, fast.
It requires jq for JSON processing and GNU parallel for concurrent searches in the notebooks.
- Is there a way to use all CPU cores while using RIBlast?
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Can cuda help me here?
Since you've got lots of images, you could use GNU Parallel to spread the job across multiple CPUs.
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5 great Perl scripts to keep in your sysadmin toolbox
Gnu parallel
- Is there an .deb package for installing GNU parallel?
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Modern SPAs without bundlers, CDNs, or Node.js
You could easily use something like GNU Parallel:
https://www.gnu.org/software/parallel/
What are some alternatives?
Parallel-And-Concurrent-Programming - Concurrent and parallel programming might seem complex, but this guide simplifies it. Learn about sequential vs non-sequential programming, processes, and threads. Explore examples in popular languages like C++, Python, and JavaScript to apply your new knowledge to your projects.
Parallel
bazel-buildfarm - Bazel remote caching and execution service
lolcate-rs - Lolcate -- A comically fast way of indexing and querying your filesystem. Replaces locate / mlocate / updatedb. Written in Rust.
xidel - Command line tool to download and extract data from HTML/XML pages or JSON-APIs, using CSS, XPath 3.0, XQuery 3.0, JSONiq or pattern matching. It can also create new or transformed XML/HTML/JSON documents.
jc - CLI tool and python library that converts the output of popular command-line tools, file-types, and common strings to JSON, YAML, or Dictionaries. This allows piping of output to tools like jq and simplifying automation scripts.
ripgrep - ripgrep recursively searches directories for a regex pattern while respecting your gitignore
parallel - xargs for concurrent, distributed execution of shell commands
micro-editor - A modern and intuitive terminal-based text editor
zsh-autosuggestions - Fish-like autosuggestions for zsh
tmux - tmux source code
zsh-syntax-highlighting - Fish shell like syntax highlighting for Zsh.