org-pdftools VS org-roam

An alternative is to open PDFs, from Zotero or from anywhere else, with Emacs' pdf-tools (https://github.com/vedang/pdf-tools). If you annotate the pdf, those annotations are part of the pdf. And you can also use org-noter (https://github.com/weirdNox/org-noter) and org-noter-pdftools (https://github.com/fuxialexander/org-pdftools; but see https://github.com/fuxialexander/org-pdftools/issues/93#issuecomment-1493314118 if you use the new org-noter from https://github.com/org-noter/org-noter).

Periodically, I go through the pdfs I've read (I have a collection in Zotero for the stuff I am in the process of reading) and I use org-noter-pdftools (see https://github.com/fuxialexander/org-pdftools ; this is different from, and extends and depends on, org-noter which, by the way, has recently got new maintainers) to extract all annotations in the pdf to a note that is associated to each pdf. One to one mapping here: one pdf file - one .org file for notes. These notes are basically just org(-roam) files that store the annotations for easy searching (see below) and to allow my linking to specific, individual, highlights (or text annotations). I think that initially setting everything up to my satisfaction was a little bit confusing (e.g., the names of some functions I think are the same between org-noter and org-noter-pdftools and sometimes it was unclear to me the differences in functionality between the two packages); but now it works flawlessly. From org-noter-pdftools I specially like how easy it is to get all the highlights, text annotations, etc (not manual scribbling, of course, and see also below for "typewritter" annotations) into an org-roam note that links directly to the exact location in the pdf.

Check out my screencast on org-noter. I don't think anything else comes close to this kind of workflow. Unfortunately it's not production ready yet. There's a related project org-noter--pdftools, I don't recall what it's state is.

First I tried config from here - https://emacs.stackexchange.com/questions/19686/how-to-use-pdf-tools-pdf-view-mode-in-emacs but the package in unmaintained, so I used https://github.com/fuxialexander/org-pdftools

[2] https://github.com/fuxialexander/org-pdftools

I keep absolutely everything in a single folder. Saved documents, images, movies, financial records, game saves, it doesn't matter. My hierarchical naming scheme takes care of organization. On the odd occasion I actually need a folder, I just append ".d" to the filename.

I use . as a hierarchy delimiter, so file extensions are just part of the hierarchy, and I can have multiple files with the same name except for the extension. For example, "film.spongebob.png" is a photo of spongebob, "film.spongebob.org" is a note about spongebob, and "film.spongebob.s1.e7" is my favorite episode.

I use org-roam [1] for note-taking and task/time-management. I absolutely require a plain-text system so it either had to be markdown or org-mode. Emacs was the deciding factor, else I would have still been using Dendron [2]

If OneNote is your thing, I'd probably recommend Obsidian [3] over org-roam. Despite it being the greatest program ever created, Emacs is a lot to learn "just" for taking notes.

If you like VS Code, check out Dendron. It's the one that got me into more serious PKMS instead of just chucking notes in a folder all willy nilly.

- [1]: https://www.orgroam.com/

- [2]: https://www.dendron.so/

- [3]: https://obsidian.md/

I'm using org-roam to keep my notes, which generally works well for me. There's one thing I am missing and I'm wondering if I just overlooked it, or whether it simply doesn't exist.

Org-Roam is a Roam-inspired Emacs mode that builds on top of org mode. Every node (aka note) has a unique ID that's different from its name. Every link from node A to node B actually links to the ID, so you can change node B's name without affecting the link. When you're on node B, you can open the Roam buffer and it will show you all of the links that point to that node.

Org Mode. I can export my notes to LaTeX or HTML and keep things tidy in a zettelkasten with org-roam.

Of course, the real power-user move would be to use Emacs with Org-Roam, but you have to be prepared to dive deep into the rabbit-hole. If you don't, it won't be worth it. If you do, you'll be handsomely rewarded. I know because I have, and I can highly recommend it if you like tinkering with and customising your tools. IMO, Doom Emacs is the way to go nowadays.

I'd highly recommend Org-roam. It's what has enabled me to actually start consistently keeping notes (and being able to retrieve/access them later). It's very easy with Org-roam to quickly add new notes, or add information to old notes, and the links/backlinks make (re)discoverability very easy.