nnUNet
segmentation_models
nnUNet | segmentation_models | |
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11 | 8 | |
5,045 | 4,611 | |
3.6% | - | |
9.2 | 0.0 | |
4 days ago | 4 months ago | |
Python | Python | |
Apache License 2.0 | MIT License |
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nnUNet
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Where to even begin to extract yellow spots from these pictures?
Now just run your images and masks in nnUNet to see if it works. https://github.com/MIC-DKFZ/nnUNet
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[D] Improvements/alternatives to U-net for medical images segmentation?
I would also try the nnU-Net which should give state-of-the-art performance, and so will give you a good idea of what's possible with the dataset that you have: https://github.com/MIC-DKFZ/nnUNet
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Seeking ideas for Road Damage Detection
I used the nnUnet repo and their guide on using it on your own data
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Model conversion from Pytorch to Tf using Onnx.
Hi all, Does anyone have experience with converting a nnUNet pytorch models into Tf using Onnx?
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[D] Best practices for training medical imaging models
If you want my honest opinion, you should probably always use nnUnet as a baseline for any 3d segmentation tasks - https://github.com/MIC-DKFZ/nnUNet.
- Image segmentation: huggingface segformers vs detectronv2
- How to get started with 3D computer vision?
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3D rcnn
Not a "detection" but a "segmenting" CNN: https://github.com/MIC-DKFZ/nnunet
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Underwhelming performance of Tesla V100 and A100 in vast.ai, why?
I ran some model fitting performance benchmarks on a 3D (medical) image segmentation UNET on various cloud providers and I am flabbergasted by the very low performance of V100 and A100 machines on vast.ai.
- [D] Which approach is recommended for Brain 🧠Tumor Segmentation on MRI scans (DICOM Files)?
segmentation_models
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Instance segmentation of small objects in grainy drone imagery
Also, I’d suggest considering switching to the segmentation-models library - it provides U-Net models with a variety of pretrained backbones of as encoders. The author also put out a PyTorch version. https://github.com/qubvel/segmentation_models.pytorch https://github.com/qubvel/segmentation_models
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segmentation-models No module Error
I used segmentation-models (https://github.com/qubvel/segmentation_models) to create a deeplabv3+ model. I havent used it in the last 2 months and now i comeback to the same code and cant use it. Getting ModuleNotFoundError: No module named 'segmentation_models_pytorch.deeplabv3'
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recommendations for semantic segmentation of lowish volumes of biomedical images
I'm building some semantic segmentation models off of low-moderate volumes of biomedical images (~500 - 1k images). So far I've done some hyperparameter sweeping (learning rate, transfer learning, architectures, dropout layers) using the Segmentation Models package from qubvel https://github.com/qubvel/segmentation_models but I'm only seeing moderate performance and minimal differences between tested parameters.
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Can we use autoencoders to change an existing image instead of create one from scratch?
So, image segmentation (especially for satellite images) is a known problem. Search for semantic segmentation and unet (a model used for semantic segmentation). Also, if you use tensorflow there is this library which I found useful segmentation models.
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Anyone implemented latest image segmentation models/tuning from cvpr 2021?
I am doing an image segmentation project using https://github.com/qubvel/segmentation_models as the baseline. I was wondering if any of you have tried the latest segmentation models from cvpr papers. If yes, which ones you found to be interesting or actually improve miou. And how difficult/easy it is to implement those?
- Semantic Segmentation
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Any way to speed up inference prepare operations on host (CPU)?
That is just U-net from this repo, anything aside is slicing images to fit into window and predict call. I measure time of predict() and it is the same as profiler numbers, so definitely my other operations are beyond profiler. C API code is just creating tensors and calling TF_SessionRun plus slice operations with opencv. Can't post code, sorry.
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D Simple Questions Thread December 20 2020
I'm trying to train image segmentation model with transfer learning using https://github.com/qubvel/segmentation_models/.
What are some alternatives?
3d-multi-resolution-rcnn - Official PyTorch implementaiton of the paper "3D Instance Segmentation Framework for Cerebral Microbleeds using 3D Multi-Resolution R-CNN."
efficientnet-lite-keras - Keras reimplementation of EfficientNet Lite.
medicaldetectiontoolkit - The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
efficientnet - Implementation of EfficientNet model. Keras and TensorFlow Keras.
mmpose - OpenMMLab Pose Estimation Toolbox and Benchmark.
BlenderProc - A procedural Blender pipeline for photorealistic training image generation
albumentations - Fast image augmentation library and an easy-to-use wrapper around other libraries. Documentation: https://albumentations.ai/docs/ Paper about the library: https://www.mdpi.com/2078-2489/11/2/125
SegmentationCpp - A c++ trainable semantic segmentation library based on libtorch (pytorch c++). Backbone: VGG, ResNet, ResNext. Architecture: FPN, U-Net, PAN, LinkNet, PSPNet, DeepLab-V3, DeepLab-V3+ by now.
segmentation_models.pytorch - Segmentation models with pretrained backbones. PyTorch.
rembg-greenscreen - Rembg Video Virtual Green Screen Edition
s2ds
unet - unet for image segmentation