nim-plotly
mosdepth
nim-plotly | mosdepth | |
---|---|---|
1 | 3 | |
168 | 656 | |
0.0% | - | |
0.0 | 6.3 | |
almost 2 years ago | 18 days ago | |
Nim | Nim | |
MIT License | MIT License |
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nim-plotly
mosdepth
- Calculating Average Coverage or Read Depth for a Sequence (WES)
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Why is bedtools genomecov giving me a blank output file?
I'm not sure why that happens, but an alternative to bedtools genomecov is mosdepth. Maybe you can try that tool instead as it's very reliable.
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Is there a tool that quantifies “spatial coverage”, that is what percentage of a reference assembly has a read mapped to it?
I would give mosdepth a look. It can provide depth across a chromosome/contig at each base, or a mean depth for a given window size (eg 1kb), or regions provided within a bed file, or a simple summary of the mean depth across each chromosome/contig.
What are some alternatives?
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