mosdepth
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| mosdepth | bro | |
|---|---|---|
| 3 | 1 | |
| 654 | 19 | |
| - | - | |
| 5.2 | 9.2 | |
| 12 days ago | about 2 months ago | |
| Nim | Nim | |
| MIT License | GNU Lesser General Public License v3.0 only |
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mosdepth
- Calculating Average Coverage or Read Depth for a Sequence (WES)
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Why is bedtools genomecov giving me a blank output file?
I'm not sure why that happens, but an alternative to bedtools genomecov is mosdepth. Maybe you can try that tool instead as it's very reliable.
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Is there a tool that quantifies “spatial coverage”, that is what percentage of a reference assembly has a read mapped to it?
I would give mosdepth a look. It can provide depth across a chromosome/contig at each base, or a mean depth for a given window size (eg 1kb), or regions provided within a bed file, or a simple summary of the mean depth across each chromosome/contig.
bro
What are some alternatives?
nimbus-eth1 - Nimbus: an Ethereum Execution Client for Resource-Restricted Devices
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nim-plotly - plotly wrapper for nim-lang
nodejs - Alternative StdLib for Nim for NodeJS/JavaScript targets, hijacks NodeJS StdLib for Nim
moe - A command line based editor inspired by Vim. Written in Nim.
Stackoverflow-Clone - Clone project of a famous Q/A website for developers which is stackoverflow built using MySQL-Express-React-Node :globe_with_meridians: [Moved to: https://github.com/Mayank0255/Stackoverflow-Clone-Frontend]
INim - Interactive Nim Shell / REPL / Playground
css-docs - CSS Selectors, Flexbox, Grid, Box Model, visually explained.
Unchained - A fully type safe, compile time only units library.
adventofcode2022 - Advent of Code 2022 solutions in Nim
Stackoverflow-Clone-Frontend - Clone project of a famous Q/A website for developers built using MySQL, Express, React, Node, Sequelize :globe_with_meridians: