mosdepth
nim-plotly
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| mosdepth | nim-plotly | |
|---|---|---|
| 3 | 1 | |
| 654 | 168 | |
| - | -0.6% | |
| 5.2 | 0.0 | |
| 12 days ago | almost 2 years ago | |
| Nim | Nim | |
| MIT License | MIT License |
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mosdepth
- Calculating Average Coverage or Read Depth for a Sequence (WES)
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Why is bedtools genomecov giving me a blank output file?
I'm not sure why that happens, but an alternative to bedtools genomecov is mosdepth. Maybe you can try that tool instead as it's very reliable.
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Is there a tool that quantifies “spatial coverage”, that is what percentage of a reference assembly has a read mapped to it?
I would give mosdepth a look. It can provide depth across a chromosome/contig at each base, or a mean depth for a given window size (eg 1kb), or regions provided within a bed file, or a simple summary of the mean depth across each chromosome/contig.
nim-plotly
What are some alternatives?
nimbus-eth1 - Nimbus: an Ethereum Execution Client for Resource-Restricted Devices
ggplotnim - A port of ggplot2 for Nim
moe - A command line based editor inspired by Vim. Written in Nim.
INim - Interactive Nim Shell / REPL / Playground
nim-dnsprotocol - Domain Name System (DNS) protocol for Nim programming language
Unchained - A fully type safe, compile time only units library.
adventofcode2022 - Advent of Code 2022 solutions in Nim
Neel - A Nim library for making Electron-like HTML/JS GUI apps, with full access to Nim capabilities.
telegram-to-pocket-bot - Telegram Bot to save links to Pocket
bro - Bro - A super fast stylesheet language for cool kids! Alternative to SassC, DartSass SassJS and Less.
nimpylib - Some python standard library functions ported to Nim