irap
integrated RNA-seq Analysis Pipeline (by nunofonseca)
awesome-nextflow
A curated list of nextflow based pipelines (by nextflow-io)
irap | awesome-nextflow | |
---|---|---|
2 | 2 | |
82 | 546 | |
- | 4.0% | |
0.0 | 0.0 | |
about 5 years ago | over 1 year ago | |
R | ||
GNU General Public License v3.0 only | Creative Commons Zero v1.0 Universal |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
irap
Posts with mentions or reviews of irap.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-09-22.
-
so, lets talk about the GNU make vs nextflow / snakemake...
I say that as somebody who (in my very un-humble opinion) is highly proficient at using make, and with a vast experience writing NGS pipelines using make: I did it all through my PhD and postdoc, and I also used the GNU make-based iRAP pipeline which was developed by a colleague (and for which I provided extensive testing and feedback).
- IRAP – Integrated RNA-Seq Analysis Pipeline
awesome-nextflow
Posts with mentions or reviews of awesome-nextflow.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-05-11.
-
Feel very hard writing nextflow pipeline.
Hello, I am writing nextflow pipeline after reading nextflow docs and some examples. But I am struggling because nextflow could do some basic scripting, but lacks instructions. For example: How to wrap long strings? params.steps = "xxxx..." If "xxxx..." is very very long, and if I am writing python, I can write "xxxx..." in two lines like: params.steps = "xxxx..." \ "xxxx..."
- so, lets talk about the GNU make vs nextflow / snakemake...
What are some alternatives?
When comparing irap and awesome-nextflow you can also consider the following projects:
awesome-interview-questions - :octocat: A curated awesome list of lists of interview questions. Feel free to contribute! :mortar_board:
nextflow - A DSL for data-driven computational pipelines
awesome-react - A collection of awesome things regarding React ecosystem
awesome-nodejs - :zap: Delightful Node.js packages and resources
build-your-own-x - Master programming by recreating your favorite technologies from scratch.
computer-science - :mortar_board: Path to a free self-taught education in Computer Science!