invesalius3
fhir
invesalius3 | fhir | |
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2 | 9 | |
581 | 517 | |
1.4% | 2.3% | |
9.7 | 9.6 | |
10 days ago | 2 days ago | |
Python | HTML | |
GNU General Public License v3.0 only | GNU General Public License v3.0 or later |
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invesalius3
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Dicom File Format Basics
Oh, nice! Somehow I had missed this one and was wondering why nobody had created a cross-platform python viewer that's simpler than slicer. I'll check it out!
https://github.com/invesalius/invesalius3
- Who owns the copyright to my medical images?
fhir
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AWS Step Functions Callback Pattern
I skipped over the prepare change function that is at the beginning of the sub-map flow because it's outside of the scope of this article. But when you choose AWS HealthLake you are signing up for a FHIR compliant datastore. FHIR stands for Fast Healthcare Interoperable Resource and it's the go-to and preferred format for exchanging Patient and other Healthcare data between domain boundaries externally. The prepare function breaks the NDJSON up and makes little FHIR payloads to be sent downstream into the ecosystem.
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Salary transparency thread
For someone breaking into the industry, I would recommend starting here: https://hl7.org/fhir/ This is the future of data interoperability in healthcare. And if you understand this and how it works and get certified in it, you should be able to write your own ticket. If you can combine that with API development chops, you are golden. One thing I'll note is that healthcare data is its own unique animal but the items you see on that page look very similar to how healthcare data is organized in major systems.
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Issue with ordering JSON keys when marshalling an ordered map
In this case, it appears that the source data are FHIR resources where a resourceType field canonically comes first (though is not required by the spec to do so I believe).
- Helseplattformen har valgt et system som er utviklet for et annet helsevesen og som det er logiske problemer med å få til å fungere hos oss
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Anyone else work with health databases or HL7v2 everyday, but still a bit bamboozled by the concept of FHIR?
The docs are very helpful: https://hl7.org/fhir/
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XPathNodeIterator not Iterating/Having Trouble with Returning Attributes
XPathDocument docNav; XPathNavigator nav; XPathNodeIterator nodeIter; string strExpression1; docNav = new XPathDocument(@"..\..\..\patient-example.xml"); nav = docNav.CreateNavigator(); XmlNamespaceManager namespaceManager = new XmlNamespaceManager(nav.NameTable); namespaceManager.AddNamespace("fhir", "http://hl7.org/fhir"); strExpression1 = "/Patient/telecom"; nodeIter = nav.Select(strExpression1, namespaceManager)); Console.WriteLine($"The XPath {strExpression1} expression yields the following phone numbers: "); while (nodeIter.MoveNext()) { XPathNodeIterator childIter = nodeIter.Current.SelectChildren("value", ""); Console.WriteLine($"Attribute: {childIter.Current.GetAttribute("value", "")}"); };
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Who owns the copyright to my medical images?
I want to point out that in the United States, patients have access to their health data via API using open standards that are free and accessible for developers.
This is now.
There is a huge lack of applications that make use of these APIs and the opportunities to improve patient's managing their own health are enormous.
You can start here:
http://hl7.org/fhir/
(and maybe click on Resources to get an idea of what this is all about).
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Need Medical Knowledge Graph
Have you heard about FHIR? http://hl7.org/fhir/ It's expressed in Turtle (among other formats). Not specifically for mental disorder, but it might help.
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Billing API for Medicaid and Tricare
Here is the implementation if you want to give it a go: https://github.com/HL7/fhir
What are some alternatives?
u-dicom-viewer - A simple web browser DICOM viewer for any device.
synthea - Synthetic Patient Population Simulator
MRIcroGL - v1.2 GLSL volume rendering. Able to view NIfTI, DICOM, MGH, MHD, NRRD, AFNI format images.
Zato - ESB, SOA, REST, APIs and Cloud Integrations in Python
dwv - DICOM Web Viewer: open source zero footprint medical image library.
healthlake-export-manager - Sample and working repos to demonstrate exporting data from AWS HealthLake to trigger downstream operations
pedicom - Documentation and proofs of concept on the polyglot file PEDICOM (PE executable + DICOM)
umls2rdf - These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
cogat - Cognitive Atlas