hts.cr
HTSlib bindings for Crystal (by bio-cr)
ruby-htslib
HTSlib bindings for Ruby (by kojix2)
| hts.cr | ruby-htslib | |
|---|---|---|
| 1 | 1 | |
| 10 | 8 | |
| - | - | |
| 5.9 | 7.4 | |
| 3 months ago | 3 months ago | |
| Crystal | Ruby | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
hts.cr
Posts with mentions or reviews of hts.cr.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-18.
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Show a Tanuki with Samtools!
First, let's make sure that Samtools can be built successfully. Note that the build requires htslib and other dependencies. In my case, I put htslib directory in the same directory as samtools because I build htslib by myself for htslib binding of Crystal language which I make for my personal interest. If you put htslib here, samtools can detect it automatically. htslib requires submodules git submodule update -i --recursive. If you get stuck, please google it. It would be safer to check out a stable tag git checkout 1.16.1, and switch to a new branch git switch tanuki. It is up to you.
ruby-htslib
Posts with mentions or reviews of ruby-htslib.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-07-26.
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ffi-bitfield
I'm working on a bioinformatics-related binding called ruby-htslib. htslib makes heavy use of bit fields throughout the library, so supporting bit fields is inevitable.
What are some alternatives?
When comparing hts.cr and ruby-htslib you can also consider the following projects:
cyvcf2 - cython + htslib == fast VCF and BCF processing
ffi - Ruby FFI
zstd.cr - Crystal bindings to the Zstandard (zstd) compression library
sambamba - Tools for working with SAM/BAM data
ffi-bitfield - Bit field for Ruby-FFI