gwas2vcf
pybenchmarks
gwas2vcf | pybenchmarks | |
---|---|---|
1 | 1 | |
39 | 19 | |
- | - | |
0.0 | 3.8 | |
about 1 year ago | 5 months ago | |
Python | Python | |
MIT License | GNU General Public License v3.0 or later |
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gwas2vcf
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Nuitka: An extremely compatible Python compiler
Here is the original repo I have tried to speed up using:
python -m nuitka --clang --follow-imports main.py
repo: https://github.com/MRCIEU/gwas2vcf
If someone can make the program run faster by whatever means, it will make a bunch of people quite happy.
pybenchmarks
What are some alternatives?
TileDB-VCF - Efficient variant-call data storage and retrieval library using the TileDB storage library.
py2many - Transpiler of Python to many other languages
truvari - Structural variant toolkit for VCFs
graalvm-ten-things - Top 10 Things To Do With GraalVM
quickjs - Public repository of the QuickJS Javascript Engine.
sgkit - We've moved to https://github.com/sgkit-dev/sgkit
Hail - Cloud-native genomic dataframes and batch computing
Nuitka - Nuitka is a Python compiler written in Python. It's fully compatible with Python 2.6, 2.7, 3.4, 3.5, 3.6, 3.7, 3.8, 3.9, 3.10, and 3.11. You feed it your Python app, it does a lot of clever things, and spits out an executable or extension module.