gnomad-browser
Gravitational Teleport
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gnomad-browser | Gravitational Teleport | |
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15 | 61 | |
78 | 16,543 | |
- | 3.7% | |
9.7 | 10.0 | |
3 days ago | 4 days ago | |
TypeScript | Go | |
MIT License | GNU Affero General Public License v3.0 |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
gnomad-browser
- All identified polymorphisms in a given gene, how to find?
- AskScience AMA Series: We're human genetics researchers here to discuss connections between people in different geographical regions. Ask us anything!
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Converting 23&Me raw data into a format usable by Admixtools 2
try one of these: GnomAD (https://gnomad.broadinstitute.org/) 1000 Genomes (http://browser.1000genomes.org) dbSNP (http://www.ncbi.nlm.nih.gov/snp)
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What is the maximum number of human?
Maybe you can ask the opposite question; what are the bounds of of a functional human being. https://gnomad.broadinstitute.org/ GnomAD is a aggregation of healthy human genetic sequences which was primarily built on the aggregated control groups of many genetic sequencing studies. There are studies of this data analysing the co-occurrence of variants in gnomAD which may help.
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Insights from personal sequencing data I can explore.
Maybe something like this? https://promethease.com/ Clinvar for variants that might be of clinical relevance. https://gnomad.broadinstitute.org/ for allele frequencies & some info about variants.
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What are some non-pathogenic alleles of the SNCA gene, or how do I find them?
You could look at aggregation databases such as gnomad https://gnomad.broadinstitute.org/ anything with a frequency incompatible with the disease is likely non pathogenic
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Ask HN: Who is hiring? (March 2022)
Broad Institute of MIT and Harvard | Cambridge, MA | Frontend Software Engineer | REMOTE or HYBRID (New England area)
We are hiring a frontend developer to help lead the next phase of the gnomAD browser, a web application for displaying the world's largest collection of human genome/exome sequences. https://gnomad.broadinstitute.org. Looking for applicants who are excited about data visualization and designing complex interfaces for scientific research.
Apply here: http://broad.io/cq7dw8
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Ask HN: Who is hiring? (February 2022)
Broad Institute of MIT and Harvard | New England | Software Engineer | REMOTE/HYBRID
Our team is focused on building the tools necessary to visualize and interpret massive data sets of human genetic variation and functional genomic information. We have developed gnomAD (https://gnomad.broadinstitute.org), the world’s largest public reference dataset of human exomes and genomes. gnomAD has become one of the most widely used resources in the field, and is now the default reference database for virtually all clinical interpretation pipelines, as well as a standard analysis resource for a wide variety of genetic and biological studies. We estimate gnomAD has contributed to the clinical diagnosis of over 2 million patients with genetic disorders.
Your role will be to maintain the gnomAD browser, our open source web application for exploring gnomAD and related datasets, and develop new scientific functionality as we continue to grow to over 1 million human samples. You will work with a team of software engineers, computational biologists and clinical and research users to develop new features and visualizations that incorporate user feedback. Software engineering skills and an interest in user interface design and data visualization are key. Basic familiarity with genomics and DNA sequencing data is preferred, but not required. Most importantly, the ideal candidate will have enthusiasm for playing a critical role in a team-oriented project and learning new domains.
Minimum Requirements
- Ask HN: How to be my own genetic disease researcher for my partner?
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How to check if a discovered mutation is novel or was discovered before ?
If you're talking about humans, start with gnomAD: https://gnomad.broadinstitute.org/
Gravitational Teleport
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Apache Guacamole: a clientless remote desktop gateway
https://github.com/gravitational/teleport/blob/master/rfd/00...
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Parsing the Postgres protocol – logging executed statements
I ordinarily would have said you reinvented Teleport <https://github.com/gravitational/teleport/tree/v14.3.7#readm...> but now that they've gone AGPL with v15 I'm guessing there's a market for MIT licensed stuff, although for sure since Teleport has been around for so long it has encountered more edge cases and undergone more security reviews. I was surprised while digging up the link that Gravatational is still releasing v13 and v14 updates under Apache 2, so maybe even Teleport will continue to have legs for those who cannot deploy AGPL stuff
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👑 Top Open Source Projects of 2023 🚀
Teleport is an SSH for Clusters and Teams and aims to be the drop-in replacement for OpenSSH.
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Release Radar • February 2024 Edition
Are you looking to set up SSO for your cloud infrastructure? Or maybe establish tunnels to access services behind NATs and firewalls. Then Teleport is for you. It provides connectivity, authentication, access controls and audit for infrastructure. The newest update has a tonne of new features and improvements including enhanced device trust support, SSH connection resumption, MFA for admin actions, improved provisioning for Okta, and heaps. more. Check out all the changes in the Teleport release notes.
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OpenBao – FOSS Fork of HashiCorp Vault
In case you didn't see it: https://goteleport.com/blog/teleport-oss-switches-to-agpl-v3... and https://github.com/gravitational/teleport/pull/35259
I readily admit it's not the same amount of :fu: as BuSL or whatever the fuck is going on over at Sentry but still :-( as compared to their much friendlier Apache 2
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Who's hiring developer advocates? (December 2023)
Link to GitHub -->
- Teleport relicenses from Apache 2.0 to AGPLv3
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Gravitational Teleport alternatives - netbird, ZeroTier, and awl
4 projects | 29 Jun 2023
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Passkeys for Infrastructure
OP here, thanks for posting! Happy to Answer any questions. I have to give our a shoutout to Alan at Teleport for all his work on Passwordless and his work to make Passwordless / TouchID work with MacOS CLI https://github.com/gravitational/teleport/blob/master/rfd/00...
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RustDesk – Free and open source alternative to TeamViewer
I work on the Desktop Access feature for Teleport: https://goteleport.com/docs/desktop-access/getting-started/
The tool itself is open core: https://github.com/gravitational/teleport
Most of the desktop access stuff is open source. The only desktop related thing that's proprietary is our tool that allows for access to machines not connected to Active Directory. A sizeable chunk of the desktop access code is even Written In Rust™: https://github.com/gravitational/teleport/tree/master/lib/sr...!
What are some alternatives?
webviz - web-based visualization libraries
Pomerium - Pomerium is an identity and context-aware reverse proxy for zero-trust access to web applications and services.
haystack - :mag: LLM orchestration framework to build customizable, production-ready LLM applications. Connect components (models, vector DBs, file converters) to pipelines or agents that can interact with your data. With advanced retrieval methods, it's best suited for building RAG, question answering, semantic search or conversational agent chatbots.
KeyBox - Bastillion is a web-based SSH console that centrally manages administrative access to systems. Web-based administration is combined with management and distribution of user's public SSH keys.
metamask-extension - :globe_with_meridians: :electric_plug: The MetaMask browser extension enables browsing Ethereum blockchain enabled websites
vouch-proxy - an SSO and OAuth / OIDC login solution for Nginx using the auth_request module
aioli - Framework for building fast genomics web tools with WebAssembly and WebWorkers
telepresence - Local development against a remote Kubernetes or OpenShift cluster
Baserow - Open source no-code database and Airtable alternative. Create your own online database without technical experience. Performant with high volumes of data, can be self hosted and supports plugins
Mosh - Mobile Shell
FrameworkBenchmarks - Source for the TechEmpower Framework Benchmarks project
Multi SSH Config - Mirror of https://gitlab.com/osiux/multi-ssh-config