getting-started-with-genomics-tools-and-resources
Unix, R and python tools for genomics and data science (by crazyhottommy)
smk-simple-slurm
A simple Snakemake profile for Slurm without --cluster-config (by jdblischak)
| getting-started-with-genomics-tools-and-resources | smk-simple-slurm | |
|---|---|---|
| 2 | 1 | |
| 1,104 | 119 | |
| - | - | |
| 4.8 | 3.0 | |
| 5 days ago | about 2 months ago | |
| Shell | Shell | |
| - | Creative Commons Zero v1.0 Universal |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
getting-started-with-genomics-tools-and-resources
Posts with mentions or reviews of getting-started-with-genomics-tools-and-resources.
We have used some of these posts to build our list of alternatives
and similar projects.
- Does pitt offer any r-programming courses for non-CS majors?
-
What are some of the best free software out there for exploratory bioinformaticians / aspiring synthetic biology researchers?
And, a much more comprehensive list of tools from a github contributor: https://github.com/crazyhottommy/getting-started-with-genomics-tools-and-resources
smk-simple-slurm
Posts with mentions or reviews of smk-simple-slurm.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Snakemake question regarding the --resources parameter
If you use Slurm to manage jobs, you can use smk-simple-slurm. This script allows you to define multiple clusters and adjust which rule uses GPU by providing the cluster name in the resources parameter of your rule or config file.
What are some alternatives?
When comparing getting-started-with-genomics-tools-and-resources and smk-simple-slurm you can also consider the following projects:
manjaro-linux - Shell scripts for setting up Manjaro Linux for Python programming and deep learning
TeamTeri - Bioinformatics on GCP, AWS or Azure
scanpy - Single-cell analysis in Python. Scales to >1M cells.
juicer - A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
bioconda-recipes - Conda recipes for the bioconda channel.
biozsh - the z in bioinformatics
biowasm - WebAssembly modules for genomics
nextflow - A DSL for data-driven computational pipelines
metaflow-on-kubernetes-docs - Documentation For Running Metaflow on Kubernetes
dash - Data Apps & Dashboards for Python. No JavaScript Required.
getting-started-with-genomics-tools-and-resources vs manjaro-linux
smk-simple-slurm vs TeamTeri
getting-started-with-genomics-tools-and-resources vs scanpy
smk-simple-slurm vs juicer
getting-started-with-genomics-tools-and-resources vs bioconda-recipes
smk-simple-slurm vs biozsh
getting-started-with-genomics-tools-and-resources vs biowasm
smk-simple-slurm vs bioconda-recipes
getting-started-with-genomics-tools-and-resources vs TeamTeri
smk-simple-slurm vs nextflow
getting-started-with-genomics-tools-and-resources vs metaflow-on-kubernetes-docs
getting-started-with-genomics-tools-and-resources vs dash