datashader
SciencePlots
| datashader | SciencePlots | |
|---|---|---|
| 1 | 8 | |
| 3,212 | 6,519 | |
| 0.7% | - | |
| 7.9 | 5.9 | |
| 7 days ago | 3 months ago | |
| Python | Python | |
| BSD 3-clause "New" or "Revised" License | MIT License |
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datashader
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Lets-Plot: An open-source plotting library by JetBrains
If you use Julia, Makie crushes this use case and comes with great Python interop.
https://github.com/holoviz/datashader is a good one in the Python ecosystem.
SciencePlots
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Lets-Plot: An open-source plotting library by JetBrains
This seems quite similar to plotnine [0], which also provides a grammar of graphics interface for Python. That said, I love ggplot and I can't wait to use this in my research! I hope we can port/re-implement ggthemes, scientificplots [1], and other ggplot libraries for lets-plot.
0: https://plotnine.readthedocs.io/en/stable/
1: https://github.com/garrettj403/SciencePlots
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Resources for data visualization (free & paid) for scientific publications
What is it about matplotlib that you object to? If it’s just the number of commands needed to get it right, you can look at something like https://github.com/garrettj403/SciencePlots that will get you most of the way.
- Matplotlib Styles for Scientific Plotting
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LovelyPlots
I know a lot of academics that do, but wouldn't recommend it personally. Also, there is https://github.com/garrettj403/SciencePlots
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Struggling with Python
Seeing as you're doing bioinformatics, I recommend Juptyer notebooks and pandas if you're not already. The pandas documentation is very extensive which is helpful. I also recommend SciencePlots for publication quality plots.
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Using Python (and matplotlib) for plotting in academia
I have also found SciencePlots. Should I use this in addition to cmcrameri?
- Matplotlib style library for Scientific plots
What are some alternatives?
plotly.rs - Plotly for Rust
paperetl - 📄 ⚙️ ETL processes for medical and scientific papers
PyQtGraph - Fast data visualization and GUI tools for scientific / engineering applications
paperai - 📄 🤖 Semantic search and workflows for medical/scientific papers
pygg - ggplot2 syntax in python. Actually wrapper around Wickham's ggplot2 in R
dufte - :chart_with_upwards_trend: Minimalistic Matplotlib style
Pipe - A Python library to use infix notation in Python
daltonize - Simulate and correct images for dichromatic color blindness
pyrasterize - A software 3d rasterizer for pygame (no other dependencies, e.g. numpy)
sane_tikz - Reconquer the canvas: beautiful Tikz figures without clunky Tikz code
implot - Immediate Mode Plotting
VSCode-LaTeX-Inkscape - ✍️ A way to integrate LaTeX, VS Code, and Inkscape in macOS