cycle
Rust-Bio
cycle | Rust-Bio | |
---|---|---|
2 | 9 | |
20 | 1,511 | |
- | 1.4% | |
0.0 | 6.4 | |
about 2 years ago | 25 days ago | |
Rust | Rust | |
MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
cycle
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Whats your favourite open source Rust project that needs more recognition?
I'm working on a computer algebra system, but it isn't that mature and/or useful. Anyway, if interested, here's the git: https://github.com/hrkz/cycle and the wasm live demo: https://hrkz.github.io/omega/ it supports basic simplifications and derivatives right now. Working on expansions and polynomial manipulation soon.
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[Media] My Rust project was featured in one of Europe's biggest computer magazines (heise c't)
Congrats, and quite interesting to see some math projects here! I've been working on a similar parser, the big difference is that it evaluates symbolically instead of going numerical. Do you plan adding those sorts of symbolic simplifications ?
Rust-Bio
- Bioinformatics Data Structures in Rust
- Bioinformatics with Rust
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bioinformatic libraries and zig?
Does anyone know of zig native libraries for bioinformatics (here is a Rust example https://rust-bio.github.io/ )? It seems as though one could pull in a lot of bioinformatics C libraries such as done with https://github.com/brentp/hts-zig.
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Proteomics search engine written in Rust
e.g. Rust-Bio
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What are your top 3-5 programming languages and why?
I would start with the book and then rust-bio library. Rust is a pretty low level language compared to R/Python. It’s an especially good fit for writing efficient tools that make use of the kinds of algorithms / data structures that are implemented in rust-bio.
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I have to admit. The free code camp course is a bit more sparing than I would have preferred. How did everyone learn Rust?
Absolutely! It already is, e.g., https://github.com/rust-bio/rust-bio. I'm moving from the academia/nonprofit world into industry bioinformatics, and I intend to use Rust as much as possible. I've already replaced as much of my Python as possible with Rust. I feel I'm able to create larger, more complex programs with Rust because I have the compiler to keep me from making common mistakes that are so easy to make in dynamically typed languages like Perl and Python. It might take longer to write a program initially, but I've started to create a library of functions I can paste together to do things like parse a positive integer, find a bunch of files with a certain file extension, search through data for a pattern, parse CSV files, etc. Writing my latest book has provided even more common patterns I keep finding I use over and over.
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Is learning Rust and systems programming through the books Rust in Action and Crafting Interpreters a good idea?
I think there is huge potential for Rust in bioinformatics, and there are already some great projects like https://rust-bio.github.io/. It seems industry is also hiring for these skills. This Nature article is a little old, but also covers why people in the field are looking for greater safety and performance. It's relatively easy to write a Python program to do bio stuff, but it's also very easy to get lots of things wrong or for the resulting program to be slow and/or impossible to extend and maintain. In the long run, I think it makes sense to write in Rust. Perl was king in biofx when I started, and I would not have predicted it being displaced by Python, so there's good reason to believe that Python may one day be eclipsed by Rust.
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Whats your favourite open source Rust project that needs more recognition?
Well, someone mentioned https://rust-bio.github.io/
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How can one make Rust excel in the Sciences
So generally stuff in this maths/numerical space. The term is a bit deceptive because it rarely means domain-specific science libraries like rust-bio even thought that might be what you think when you hear "scientific computing".
What are some alternatives?
kalk - Scientific calculator with math syntax that supports user-defined variables and functions, complex numbers, and estimation of derivatives and integrals
dash - Data Apps & Dashboards for Python. No JavaScript Required.
bevy - A refreshingly simple data-driven game engine built in Rust
kanidm - Kanidm: A simple, secure and fast identity management platform
tauri - Build smaller, faster, and more secure desktop applications with a web frontend.
clickhouse-rs - Asynchronous ClickHouse client library for Rust programming language.
yew - Rust / Wasm framework for creating reliable and efficient web applications
GeoRust - Geospatial primitives and algorithms for Rust
volta - Volta: JS Toolchains as Code. ⚡
Rhai - Rhai - An embedded scripting language for Rust.
just - 🤖 Just a command runner
easy_rust - Rust explained using easy English