configurable-http-proxy
igv-jupyter
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| configurable-http-proxy | igv-jupyter | |
|---|---|---|
| 1 | 1 | |
| 227 | 154 | |
| 0.9% | -0.6% | |
| 7.9 | 1.8 | |
| 8 days ago | over 1 year ago | |
| JavaScript | JavaScript | |
| BSD 3-clause "New" or "Revised" License | MIT License |
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configurable-http-proxy
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A new and simple way to manage Jupyter notebooks on Kubernetes
- JupyterHub on Kubernetes uses ingress-nginx to expose JupyerHub on the Internet but the tool relies on the "well-integrated/well-known in the kubernetes ecosystem" ingress-nginx as a replacement of JupyterHub http proxy (node-http-proxy) https://github.com/jupyterhub/configurable-http-proxy to forward requests to notebooks e.g. so we don't have to add/discover/maintain yet another proxy.
igv-jupyter
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Bam viewer with custom fasta reference that's embeddable in Streamlit app?
igv-notebook and igv-jupyter seem amazing but (unsurprisingly) I could not get them to run anywhere that wasn't a jupyter notebook. I get a kernel error as it tries to initialize itself within streamlit, and I'm not sure how to embed it anywhere else.
What are some alternatives?
kubespawner - Kubernetes spawner for JupyterHub
tinycov - Command line tool to plot genomic coverage from a BAM file
notebook-on-kube - Create and manage your Notebooks on Kubernetes with ease.
ipyigv - A Jupyter wrapper for the igv.js library (representation of genomic data)
kuwala - Kuwala is the no-code data platform for BI analysts and engineers enabling you to build powerful analytics workflows. We are set out to bring state-of-the-art data engineering tools you love, such as Airbyte, dbt, or Great Expectations together in one intuitive interface built with React Flow. In addition we provide third-party data into data science models and products with a focus on geospatial data. Currently, the following data connectors are available worldwide: a) High-resolution demographics data b) Point of Interests from Open Street Map c) Google Popular Times
pybamview - Browser based application for viewing bam alignments
Nginx Proxy Manager - Docker container for managing Nginx proxy hosts with a simple, powerful interface
igv-notebook - Module for embedding igv.js in an IPython notebook
dash-bio - Open-source bioinformatics components for Dash
ipyleaflet - A Jupyter - Leaflet.js bridge