chatnoir-resiliparse
A robust web archive analytics toolkit (by chatnoir-eu)
cyvcf2
cython + htslib == fast VCF and BCF processing (by brentp)
| chatnoir-resiliparse | cyvcf2 | |
|---|---|---|
| 2 | 1 | |
| 42 | 357 | |
| - | - | |
| 7.5 | 7.7 | |
| 6 days ago | 2 months ago | |
| Cython | Cython | |
| Apache License 2.0 | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
chatnoir-resiliparse
Posts with mentions or reviews of chatnoir-resiliparse.
We have used some of these posts to build our list of alternatives
and similar projects.
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Selenium over scrapy
bs4 is a little slow, try https://github.com/chatnoir-eu/chatnoir-resiliparse, it's faster for working with the dom written in cython and based on lexbor (written in C and very fast)
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Would I ever need anything besides Python (not pro)
I've been working on this for the last several days, and learning a lot. I'm actually moving away from dask to python multiprocessing, the overhead for extremely fast functions written in cython seems to slow it down when added to a dask task graph sometimes more than running sequentially. At least that's what experiments are showing, https://github.com/chatnoir-eu/chatnoir-resiliparse/issues/23
cyvcf2
Posts with mentions or reviews of cyvcf2.
We have used some of these posts to build our list of alternatives
and similar projects.
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How can I index and query my VCF files by an INFO tag?
If you in command line, bcftools. If in python, https://github.com/brentp/cyvcf2
What are some alternatives?
When comparing chatnoir-resiliparse and cyvcf2 you can also consider the following projects:
Streaming multipart/form-data parser - Streaming (and fast!) parser for multipart/form-data written in Cython
pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
PySCIPOpt - Python interface for the SCIP Optimization Suite
htslib - C library for high-throughput sequencing data formats
pyimgui - Cython-based Python bindings for dear imgui
truvari - Structural variant toolkit for VCFs
cymem - 💥 Cython memory pool for RAII-style memory management
hts.cr - HTSlib bindings for Crystal
Cython - The most widely used Python to C compiler
ruby-htslib - HTSlib bindings for Ruby