biozsh
the z in bioinformatics (by kloetzl)
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments (by aidenlab)
| biozsh | juicer | |
|---|---|---|
| 2 | 1 | |
| 32 | 393 | |
| - | 0.8% | |
| 1.9 | 0.0 | |
| 11 months ago | 4 months ago | |
| Shell | Shell | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biozsh
Posts with mentions or reviews of biozsh.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-01-14.
-
Bash vs zsh for bioinformatics?
I have been using zsh for years in different bioinformatics environments without any big issues. I even made some bioinformatics specific autocompletions. Check out my project biozsh: https://github.com/kloetzl/biozsh
-
I made a literature management system for you CLI inclined bioinformaticians
I see that you are using zsh. You might also like biozsh.
juicer
Posts with mentions or reviews of juicer.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-04-05.
What are some alternatives?
When comparing biozsh and juicer you can also consider the following projects:
smk-simple-slurm - A simple Snakemake profile for Slurm without --cluster-config
sage - Proteomics search & quantification so fast that it feels like magic
gatk4-genome-processing-pipeline-azure - Workflows used for processing whole genome sequence data + germline variant calling.
seqkit - A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
rnaseq - RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
spades - SPAdes Genome Assembler
trinityrnaseq - Trinity RNA-Seq de novo transcriptome assembly