biogo
bio
biogo | bio | |
---|---|---|
3 | 1 | |
374 | 88 | |
1.6% | - | |
2.5 | 6.5 | |
about 2 months ago | 2 months ago | |
Go | Go | |
BSD 3-clause "New" or "Revised" License | MIT License |
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biogo
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A look at the Mojo language for bioinformatics
I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.
I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:
- https://github.com/vertgenlab/gonomics
- https://github.com/biogo/biogo
- https://github.com/shenwei356/bio
... except from there being some really popular bio tools written in Go, like:
- https://github.com/shenwei356/seqkit
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How is GO used in bioinfo?
There is bĂogo which is a general genomics library (dealing with file parsing, mostly) in the vein of Bioperl, BioPython and the other Bio* libraries. I've not really ever used it though - I almost used it the other day but the BAM parser was too bare bones for my purposes so I opted to do what I wanted in Python.
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So I evaluated Go for my next project and liked it, but ultimately didn't choose it
Btw, there is a bioinformatics scene in Go: https://github.com/biogo/biogo
bio
-
A look at the Mojo language for bioinformatics
I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.
I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:
- https://github.com/vertgenlab/gonomics
- https://github.com/biogo/biogo
- https://github.com/shenwei356/bio
... except from there being some really popular bio tools written in Go, like:
- https://github.com/shenwei356/seqkit
What are some alternatives?
frackyfrac - A standalone UniFrac calculator.