biogo
biogo is a bioinformatics library for Go (by biogo)
mmtk-julia
Julia binding for MMTk (by mmtk)
biogo | mmtk-julia | |
---|---|---|
3 | 1 | |
374 | 11 | |
1.6% | - | |
2.5 | 7.2 | |
about 2 months ago | 8 days ago | |
Go | Rust | |
BSD 3-clause "New" or "Revised" License | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biogo
Posts with mentions or reviews of biogo.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-02-11.
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A look at the Mojo language for bioinformatics
I've been thinking to learn Rust for these use cases, but always get frustrated with the complexity.
I find Go is a great middle-ground though! And now there starts to be a few more bio-related tools and toolkits out there, including:
- https://github.com/vertgenlab/gonomics
- https://github.com/biogo/biogo
- https://github.com/shenwei356/bio
... except from there being some really popular bio tools written in Go, like:
- https://github.com/shenwei356/seqkit
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How is GO used in bioinfo?
There is bĂogo which is a general genomics library (dealing with file parsing, mostly) in the vein of Bioperl, BioPython and the other Bio* libraries. I've not really ever used it though - I almost used it the other day but the BAM parser was too bare bones for my purposes so I opted to do what I wanted in Python.
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So I evaluated Go for my next project and liked it, but ultimately didn't choose it
Btw, there is a bioinformatics scene in Go: https://github.com/biogo/biogo
mmtk-julia
Posts with mentions or reviews of mmtk-julia.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2024-02-11.
-
A look at the Mojo language for bioinformatics
There's work on porting MMTk to Julia, which will provide some well written GCs: https://github.com/mmtk/mmtk-julia
What are some alternatives?
When comparing biogo and mmtk-julia you can also consider the following projects:
BlazeSeq