biofast
benchmarks
| biofast | benchmarks | |
|---|---|---|
| 3 | 40 | |
| 175 | 2,743 | |
| - | - | |
| 0.0 | 7.2 | |
| over 2 years ago | 3 months ago | |
| C | Makefile | |
| - | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biofast
-
Parsing huge files in Python
FYI: the python packages I mentioned earlier can all directly read gzip'd fastq files. See also this repo for examples.
-
Does Rust Support Reading in FATSA files?
needletail is rated in the Heng Li benchmark (https://github.com/lh3/biofast/)
- Why I Use Nim instead of Python for Data Processing
benchmarks
- Some Benchmarks of Different Languages
- Building a high performance JSON parser
- Top 5 Fastest Programming Languages
- Twitter (re)Releases Recommendation Algorithm on GitHub
-
How green or energy efficient is the Go programming language?
GitHub - kostya/benchmarks: Some benchmarks of different languages
- how to benchmark a programming language
-
Ruby 3.2.0 Is from Another Dimension
In all the language comparisons I've found over the years, Python consistently comes out slightly slower, for example:
https://github.com/kostya/benchmarks
Bearing in mind these are probably not even using YJIT, which makes Ruby considerably faster in some scenarios.
- I made a 88x88 version of the big display image command generator in Python! (will share github link if admins allow it)
-
The original computer languages benchmark is back
Also, here is another benchmark: https://github.com/kostya/benchmarks
- Why does Scala seem to be slow at benchmark results?
What are some alternatives?
nimtorch - PyTorch - Python + Nim
libuv - Cross-platform asynchronous I/O
scikit-bio - scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
lua-languages - Languages that compile to Lua
readfq - Fast multi-line FASTA/Q reader in several programming languages
julia - The Julia Programming Language
PrimesResult - The results of the Dave Plummer's Primes Drag Race
beartype - Unbearably fast near-real-time hybrid runtime-static type-checking in pure Python.
viroiddb - A curated database of all available viroid-like RNA sequences
mypyc - Compile type annotated Python to fast C extensions
RecursiveFactorization.jl
Cython - The most widely used Python to C compiler