asciiMol
PubChemPy
| asciiMol | PubChemPy | |
|---|---|---|
| 5 | 1 | |
| 350 | 357 | |
| - | - | |
| 2.8 | 0.0 | |
| 11 months ago | 19 days ago | |
| Python | Python | |
| BSD 2-clause "Simplified" License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
asciiMol
-
How would you work effectively with an extremely slow 56Kbps connection?
Eventually I'll explore also the Mosh shell to deal with connection instabilities, but so far a disconnect would not cause any data loss, I just have to reconnect and Tmux will resume everything. Heck, I've even gone as far as visualizing molecules in 3D with ASCII MOL (https://github.com/dewberryants/asciiMol).
- GitHub - dewberryants/asciiMol: Curses based ASCII molecule viewer for linux terminals.
-
Hacker News top posts: Mar 8, 2022
AsciiMol: Curses based ASCII molecule viewer for Linux terminals\ (3 comments)
- asciiMol: Curses based ASCII molecule viewer for Linux terminals
- AsciiMol: Curses based ASCII molecule viewer for Linux terminals
PubChemPy
-
Global-Chem: A Free Dictionary from Common Chemical Names to Molecules
TIL about #cheminformatics and Linked Data (Semantic Web):
Cheminformatics: https://en.wikipedia.org/wiki/Cheminformatics
https://github.com/topics/cheminformatics :
- https://github.com/hsiaoyi0504/awesome-cheminformatics #Databases #See_also
- https://github.com/mcs07/PubChemPy :
> PubChemPy provides a way to interact with PubChem in Python. It allows chemical searches by name, substructure and similarity, chemical standardization, conversion between chemical file formats, depiction and retrieval of chemical properties.
http://chemicalsemantics.com/introduction-to-the-chemical-se... ... /? chemicalsemantics github ... https://github.com/semanticchemistry/semanticchemistry #See_also :
> The Chemical Information Ontology (CHEMINF) aims to establish a standard in representing chemical information. In particular, it aims to produce an ontology to represent chemical structure and to richly describe chemical properties, whether intrinsic or computed.
Looks like they developed the CHEMINF OWL ontology in Protege 4 (which is Open Source). /ontology/cheminf-core.owl: https://github.com/semanticchemistry/semanticchemistry/blob/...
- Does it -- the {sql/xml/json/graphql, RDFS Vocabulary, OWL Ontology} schema - have more (C)Classes and (P)Properties than other schema for modeling this domain?
- What namespaced strings and URIs does it specify for linking entities internally and externally?
LOV Linked Open Vocabularies maintains a database of many RDFS vocabularies and OWL ontologies (which are represented in RDF) https://lov.linkeddata.es/dataset/lov/terms?q=chemical
- "The Linking Open Data Cloud" (2007-) https://lod-cloud.net/
/? "cheminf" https://scholar.google.com/scholar?hl=en&as_sdt=0,43&qsp=1&q...
/? "cheminf" ontology
What are some alternatives?
buffet - All-inclusive Buffer for C
semanticchemistry - Chemical Information Ontology
aizynthfinder - A tool for retrosynthetic planning
chemispy - A library for using chemistry in your applications
clib - Package manager for the C programming language.
awesome-cheminformatics - A curated list of Cheminformatics libraries and software.
jpeg-sandbox - Interactively edit individual DCT blocks in any JPEG image in the browser.
datamol - Molecular Processing Made Easy.
ScaffoldGraph - ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX, for the generation and analysis of scaffold networks and scaffold trees.
thermo - Thermodynamics and Phase Equilibrium component of Chemical Engineering Design Library (ChEDL)
browsh - A fully-modern text-based browser, rendering to TTY and browsers
chemiscripts - translate ASCII chemical formulas into Unicode