abcd-hcp-pipeline VS fmriprep

Compare abcd-hcp-pipeline vs fmriprep and see what are their differences.

abcd-hcp-pipeline

bids application for processing functional MRI data, robust to scanner, acquisition and age variability. (by DCAN-Labs)
bids-format mri-images Pipeline Image processing fmri fmri-preprocessing
Source Code
hub.docker.com
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fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results. (by nipreps)
fmri fmri-preprocessing brain-imaging Neuroimaging bids Image processing
Source Code
fmriprep.org
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abcd-hcp-pipeline fmriprep
1 1
45 607
- 1.8%
6.0 9.5
19 days ago 3 days ago
Python HTML
BSD 3-clause "New" or "Revised" License Apache License 2.0
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abcd-hcp-pipeline

Posts with mentions or reviews of abcd-hcp-pipeline. We have used some of these posts to build our list of alternatives and similar projects.
  • Siemens output from ABCD T1 and T2 sequences.
    1 project | /r/neuroscience | 8 Feb 2021
    Who provided the sequence? They're usually the point of contact for this kind of question. Alternatively, you can bug one of the processing groups for ABCD (link, and they might point you in the right direction. A shot of getting one of the ABCD or ABIDE/HCP sequence designers to see this on reddit is unlikley, but good luck.

fmriprep

Posts with mentions or reviews of fmriprep. We have used some of these posts to build our list of alternatives and similar projects.
  • How to disable RHEL
    1 project | /r/linuxquestions | 24 Dec 2022
    I am trying to download freesurfer to 3D print some scans but my freesurfer license keeps getting denied. I read that someone had the same problem and they had to disable the RHEL (Permission denied: '/opt/freesurfer/license.txt' · Issue #2243 · nipreps/fmriprep · GitHub) but I know very little about programming and cannot understand what they did to fix it.

What are some alternatives?

When comparing abcd-hcp-pipeline and fmriprep you can also consider the following projects:

mara-pipelines - A lightweight opinionated ETL framework, halfway between plain scripts and Apache Airflow

processing-imageprocessing - Collection of basic image processing algorithms for processing

papermill - 📚 Parameterize, execute, and analyze notebooks

imagetotext.app - Copy text from the raster images online

PyFunctional - Python library for creating data pipelines with chain functional programming

NIPY - Workflows and interfaces for neuroimaging packages

Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.

pdpipe - Easy pipelines for pandas DataFrames.

skull-stripping-3D-brain-mri - Apply Skulll Stripping to any 3D Brain MRI images

abcd-hcp-pipeline vs mara-pipelines fmriprep vs processing-imageprocessing abcd-hcp-pipeline vs papermill fmriprep vs imagetotext.app abcd-hcp-pipeline vs PyFunctional fmriprep vs NIPY abcd-hcp-pipeline vs Kedro abcd-hcp-pipeline vs pdpipe abcd-hcp-pipeline vs skull-stripping-3D-brain-mri