abcd-hcp-pipeline
fmriprep
abcd-hcp-pipeline | fmriprep | |
---|---|---|
1 | 1 | |
45 | 607 | |
- | 1.8% | |
6.0 | 9.5 | |
19 days ago | 2 days ago | |
Python | HTML | |
BSD 3-clause "New" or "Revised" License | Apache License 2.0 |
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abcd-hcp-pipeline
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Siemens output from ABCD T1 and T2 sequences.
Who provided the sequence? They're usually the point of contact for this kind of question. Alternatively, you can bug one of the processing groups for ABCD (link, and they might point you in the right direction. A shot of getting one of the ABCD or ABIDE/HCP sequence designers to see this on reddit is unlikley, but good luck.
fmriprep
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How to disable RHEL
I am trying to download freesurfer to 3D print some scans but my freesurfer license keeps getting denied. I read that someone had the same problem and they had to disable the RHEL (Permission denied: '/opt/freesurfer/license.txt' · Issue #2243 · nipreps/fmriprep · GitHub) but I know very little about programming and cannot understand what they did to fix it.
What are some alternatives?
mara-pipelines - A lightweight opinionated ETL framework, halfway between plain scripts and Apache Airflow
processing-imageprocessing - Collection of basic image processing algorithms for processing
papermill - 📚 Parameterize, execute, and analyze notebooks
imagetotext.app - Copy text from the raster images online
PyFunctional - Python library for creating data pipelines with chain functional programming
NIPY - Workflows and interfaces for neuroimaging packages
Kedro - Kedro is a toolbox for production-ready data science. It uses software engineering best practices to help you create data engineering and data science pipelines that are reproducible, maintainable, and modular.
pdpipe - Easy pipelines for pandas DataFrames.
skull-stripping-3D-brain-mri - Apply Skulll Stripping to any 3D Brain MRI images