TeamTeri
smk-simple-slurm
TeamTeri | smk-simple-slurm | |
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1 | 1 | |
52 | 119 | |
- | - | |
8.5 | 3.0 | |
2 months ago | about 2 months ago | |
Shell | Shell | |
- | Creative Commons Zero v1.0 Universal |
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TeamTeri
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Learn Cloud Bioinformatics
The Repo is named 'Team Teri' and includes info about bioinformatics tools, platforms as well as genomic services and architecture patterns from AWS, Azure and GCP.
smk-simple-slurm
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Snakemake question regarding the --resources parameter
If you use Slurm to manage jobs, you can use smk-simple-slurm. This script allows you to define multiple clusters and adjust which rule uses GPU by providing the cluster name in the resources parameter of your rule or config file.
What are some alternatives?
maftools - Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
juicer - A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
biowasm - WebAssembly modules for genomics
biozsh - the z in bioinformatics
bioconda-recipes - Conda recipes for the bioconda channel.
getting-started-with-genomics-tools-and-resources - Unix, R and python tools for genomics and data science
awesome-kubernetes - A curated list for awesome kubernetes sources :ship::tada:
nextflow - A DSL for data-driven computational pipelines
infrastructure-developer-tools - Infrastructure developer tools includes set of plugins and services that make it easier than ever to build, test and deploy infrastructure.
openvpn-install - Set up your own OpenVPN server on Debian, Ubuntu, Fedora, CentOS or Arch Linux.