PDBaser
Protein preparation for MD, made faster and easier ! (by mimminou)
pdbpp
pdb++, a drop-in replacement for pdb (the Python debugger) (by pdbpp)
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| PDBaser | pdbpp | |
|---|---|---|
| 1 | 9 | |
| 14 | 1,248 | |
| - | 1.2% | |
| 3.6 | 0.0 | |
| 4 months ago | 14 days ago | |
| Python | Python | |
| GNU General Public License v2.0 only | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
PDBaser
Posts with mentions or reviews of PDBaser.
We have used some of these posts to build our list of alternatives
and similar projects.
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PDBaser, an open source protein preparation tool.
Link : https://github.com/mimminou/PDBASER
pdbpp
Posts with mentions or reviews of pdbpp.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-08-02.
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The new pdbp (Pdb+) Python debugger!
Why not just use Python’s built-in pdb debugger or another existing one like ipdb or pdbpp?
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Show HN: Clamshell- an experimental Python based shell
I like pdbpp. Make sure to install from source as there hasn’t been a release in a while.
https://github.com/pdbpp/pdbpp
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Useful Python Modules for us
pdbpp: Improved pdb boltons: assorted python addtions twisted: event driven networking framework sorcery: Dark magic in python, things know where+how they are being called, helps reducing boilerplate sh: Better alternative for subprocess module, much more pythonic taskipy: npm run scipt_name like functionality snoop: pdb lite, record+replay function steps birdseye: graphical debugger remote-pdb: easy pdb from inside containers typer: wrapper around click for simpler code for CLIs arrow: Always TZ aware datetimes, plus more features more-itertools: more functions for iterators pydantic: data validation + dataclasses loguru: better logging notifiers: sending notifications from python
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For whose use Emacs and VS Code, when and why you use VSCode? #emacs #vscode
If you want to use pdbpp, install it into your Python environment you're using the debugger from and it'll automatically hook itself into pdb with no additional setup.
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What Python debugger do you use?
I love pdbpp
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Which not so well known Python packages do you like to use on a regular basis and why?
pdbpp feels like getting super powers over using pdb
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What dev tools do you use in your python projects?
Most of the tools and libraries I use have been mentioned, but I haven’t seen pdb++ brought up. It’s like ipython for debugging!
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Debug in VIM
Improved version of built-in debugger: https://github.com/pdbpp/pdbpp
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Icecream: Never use print() to debug again in Python
I like to use PDB++ which is a drop in replacement for PDB
https://github.com/pdbpp/pdbpp
What are some alternatives?
When comparing PDBaser and pdbpp you can also consider the following projects:
pdbr - pdb + Rich library
ipdb - Integration of IPython pdb
biomisc - collection of miscellaneous command line bioinformatic scripts
pudb - Full-screen console debugger for Python
tm_calculator_gui - Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives
PySnooper - Never use print for debugging again
python-devtools - Dev tools for python
snoop - A powerful set of Python debugging tools, based on PySnooper
vimspector - vimspector - A multi-language debugging system for Vim
q - Quick and dirty debugging output for tired programmers. ⛺
icecream - 🍦 Never use print() to debug again.