NPC_EE
aTweaks
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NPC_EE
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Optimization Mods
You might want to try NPC_EE for character tweaking. Lets you change classes, kits, and stats.
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Mod overview: Tweaks, convenience mods, quality of life, and other minor enhancements
NPC EE: Equivalent in functionality to Level 1 NPCs and SCS’ NPC customization, this mod equips all joinable NPCs with an item which, when activated, allows you to change their class, kit, stats, and/or proficiencies.
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Glitched companions! I wonder what caused this
I'd be willing to bet it was Lvl 1 NPCs, given that iirc it's supposed to de-level NPCs to let you reset their class/stats. I've been using NPC EE instead and it's been pretty foolproof, in my experience.
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Preparing for first BG2EE playthru.
I'd recommend NPC EE in lieu of Lvl1 NPCs, personally.
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Mod Question: Deities of Faerun vs Faith and Powers
EEkeeper hasn't been properly maintained for awhile and it may not be the most reliable method for a heavily modded install. Supposedly there can be issues with certain variables and effects not getting properly saved. Dual 2 kit works fine, or you can install the NPC EE mod and use one of the kit tomes for yourself - eg, cheat it into your inventory with this code: C:CreateItem("d5_ckit") and then use the item it spawns.
aTweaks
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Mod overview: Tweaks, convenience mods, quality of life, and other minor enhancements
Atweaks: nominally bringing the game more in line with P&P rules. As I am not tacticool enough for most of those components (read: the revised mephits kicked my ass in Chateau Irenicus), the components that I tend to use are:
What are some alternatives?
Scales_of_Balance - a tweak mod and kit pack for BG2/TOB, BGEE, BG2EE, and IWDEE
rr - A mod for BG2: ToB, bringing thieves and bards closer to their PnP counterparts
refinements - This is a mod for BG2 that alters a number of features, mainly the HLA tables and the armors' mechanics.
HQ-SoundClips-BG2EE - Restores high quality sound files for extended BG2EE content which were lost since game patch v1.3.
RandomGraionTweaks - Various tweaks presented by Graion Dilach for games on the Infinity Engine.
EET_Tweaks - A mod for Infinity Engine games
A7-HiddenGameplayOptions - A mod that makes a number of useful options directly accessible within Enhanced Edition games.
A7-NoEENPCs - A WeiDU mod for BG:EE and BG2:EE that allows you to tweak the new Beamdog NPCs