Kilosort VS fooof

Compare Kilosort vs fooof and see what are their differences.

Kilosort

Fast spike sorting with drift correction for up to a thousand channels (by MouseLand)
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Kilosort fooof
2 1
406 340
6.2% 2.1%
9.6 9.0
5 days ago 4 days ago
Python Python
GNU General Public License v3.0 only Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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Kilosort

Posts with mentions or reviews of Kilosort. We have used some of these posts to build our list of alternatives and similar projects.
  • Is there a whole “layer” of neuroscience that we haven’t uncovered yet?
    1 project | /r/neuro | 31 May 2022
    And yet, we are starting to make sense of it all! The experimental tools are really what makes the difference. Lots of recently developed genetic tools (such as optogenetics ) are now allowing us for the first time to activate/inactivate specific neurons and molecular pathways and observe the causal effects . Other genetic methods (like Crispr) allow us to create mutant animals where a specific gene is mutated, so a lot of work is now in rodents, but I expect it to translate to humans in the next decade or so. Another really crazy one are cerebral organoids, where we grow in vitro a simplified human brain from stem cells to study the details of development and the function of different genetic pathways. When it comes to brain function, the ability to record from tens of thousands of neurons simultaneously using new probes like Neuropixels has been a recent game changer. Also, machine learning approaches are now incredibly useful to analyze data, from detecting the individual "spikes" to developing complex models of the brain dynamics to support computation. To give you a concrete example of progress, we can now read a person's mind so he can write words on a screen, pretty much as quickly as if he was typing them on a keyboard.
  • Clustering Neurons
    1 project | /r/datascience | 15 Nov 2021
    I'm assuming by clustering neurons, you mean clustering spike data. There are several excellent options that already exist for this purpose, the most notable of which is KiloSort.

fooof

Posts with mentions or reviews of fooof. We have used some of these posts to build our list of alternatives and similar projects.
  • Issues interpreting EEG data
    1 project | /r/clinicalEEG | 2 May 2023
    If you have experience with Python, you can use the FOOOF (Fitting Oscillations & One Over F) toolbox to analyze your EEG data and find the highest peak in the theta band for each electrode.

What are some alternatives?

When comparing Kilosort and fooof you can also consider the following projects:

snntorch - Deep and online learning with spiking neural networks in Python

EEGwithRaspberryPI - Open-Source board for converting RaspberryPI to Brain-computer interface [Moved to: https://github.com/HackerBCI/EEGwithRaspberryPI]

brainflow - BrainFlow is a library intended to obtain, parse and analyze EEG, EMG, ECG and other kinds of data from biosensors

python-meegkit - 🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

brainstorm3 - Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

NeuroKit - NeuroKit2: The Python Toolbox for Neurophysiological Signal Processing

course-content - NMA Computational Neuroscience course

EEGwithRaspberryPI - Open-Source board for converting RaspberryPI to Brain-computer interface

Homer3 - MATLAB application for fNIRS data processing and visualization

TS-TCC - [IJCAI-21] "Time-Series Representation Learning via Temporal and Contextual Contrasting"

braindecode - Deep learning software to decode EEG, ECG or MEG signals