Clover
orange
Clover | orange | |
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1 | 27 | |
11 | 4,633 | |
- | 1.3% | |
1.7 | 9.6 | |
about 1 year ago | 3 days ago | |
Python | Python | |
GNU General Public License v3.0 only | GNU General Public License v3.0 or later |
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Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Clover
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R&D: Clover, Tree Structure-based Efficient DNA Clustering for DNA-Based Storage
Deoxyribonucleic acid (DNA)-based data storage is a promising new storage technology which has the advantage of high storage capacity and long storage time compared with traditional storage media. However, the synthesis and sequencing process of DNA can randomly generate many types of errors, which makes it more difficult to cluster DNA sequences to recover DNA information. Currently, the available DNA clustering algorithms are targeted at DNA sequences in the biological domain, which not only cannot adapt to the characteristics of sequences in DNA storage, but also tend to be unacceptably time-consuming for billions of DNA sequences in DNA storage. In this paper, we propose an efficient DNA clustering method termed Clover for DNA storage with linear computational complexity and low memory. Clover avoids the computation of the Levenshtein distance by using a tree structure for interval-specific retrieval. We argue through theoretical proofs that Clover has standard linear computational complexity, low space complexity, etc. Experiments show that our method can cluster 10 million DNA sequences into 50 000 classes in 10 s and meet an accuracy rate of over 99%. Furthermore, we have successfully completed an unprecedented clustering of 10 billion DNA data on a single home computer and the time consumption still satisfies the linear relationship. Clover is freely available at https://github.com/Guanjinqu/Clover.
orange
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Hierarchical Clustering
I know I've tooted its horn before, but Orange3 is a pretty neat Python-based GUI platform that makes this and a metric buttload of other statistical/ML techniques available to non-programmer types.
Just watch out for null character `x00` in the corpus. That always seems to kill it stone dead.
https://orangedatamining.com/
https://orange3.readthedocs.io/projects/orange-visual-progra...
- Orange Data Mining
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The Graph of Wikipedia [video]
For all you folks who aren't ace programmer types, the Orange3[1] platform gives you a very miniaturized[2] ability to turn out these sorts of visualizations very rapidly. It's not the most stable thing in the world, but the node-based ML workflow designer is worth the price of admission all by itself.
[1] https://orangedatamining.com/
[2] The Wikipedia extension in Text limits each search result to 25 articles, so sucking all of Wikipedia is . . well, Orange text analytics crashes when I look at it sideways with a null character, so let's not think about what would happen.
- Ask HN: What Underrated Open Source Project Deserves More Recognition?
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Taxonomy Management?
First is identifying the "similar" things in a corpus. Best way I know to do that, for non-programmer audiences, is the Orange Data Mining tool, which gives you a node-based text mining interface to perform statistical analysis on text. Hierarchical Clustering shows - very rapidly - how similar your "modules" are, which ones are most similar. There's many other techniques (semantic viewer, similarity hash, etc) as well - the right one will depend on how your content is laying about.
- Orange: Open-source machine learning and data visualization
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What exactly is AutoGPT?
Both tools are ripoffs of a data mining framework named Orange 3
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Why don't more people use Altair for python Visualizations instead of Plotly?
You should also check out Orange Data Mining, it allows to create a lot of charts, filter data from a chart to another, build ML models, predictions and a lot more. And you can do it with zero code.
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Advice on Transitioning to Data Science/ML/AI without Coding Experience
You can start with a free GUI based tool Orange. It is a component based data science workflow tool, which you can use to handle 60-75% of the traditional data science tasks from classification, regression, to basic neural networks.
- Has anybody used Orange?
What are some alternatives?
similarity - TensorFlow Similarity is a python package focused on making similarity learning quick and easy.
glue - Linked Data Visualizations Across Multiple Files
uis-rnn - This is the library for the Unbounded Interleaved-State Recurrent Neural Network (UIS-RNN) algorithm, corresponding to the paper Fully Supervised Speaker Diarization.
Pandas - Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
dedupe - :id: A python library for accurate and scalable fuzzy matching, record deduplication and entity-resolution.
RDKit - The official sources for the RDKit library
awesome-community-detection - A curated list of community detection research papers with implementations.
Airflow - Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
Unsupervised-Classification - SCAN: Learning to Classify Images without Labels, incl. SimCLR. [ECCV 2020]
Interactive Parallel Computing with IPython - IPython Parallel: Interactive Parallel Computing in Python
NumPy - The fundamental package for scientific computing with Python.
Dask - Parallel computing with task scheduling