DECA VS carveme

Compare DECA vs carveme and see what are their differences.

DECA

DECA: Detailed Expression Capture and Animation (SIGGRAPH 2021) (by yfeng95)

carveme

CarveMe: genome-scale metabolic model reconstruction (by cdanielmachado)
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DECA carveme
5 2
2,009 138
- -
0.0 5.0
9 months ago 2 months ago
Python Python
GNU General Public License v3.0 or later GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

DECA

Posts with mentions or reviews of DECA. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-04-27.

carveme

Posts with mentions or reviews of carveme. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-19.
  • Advice on how to go about genome scale metabolic model construction
    3 projects | /r/bioinformatics | 19 Nov 2021
    Carveme: https://academic.oup.com/nar/article/46/15/7542/5042022 https://github.com/cdanielmachado/carveme https://carveme.readthedocs.io/en/latest/usage.html
  • metaGEM: create your own genome scale metabolic models directly from metagenomes
    3 projects | /r/bioinformatics | 5 Jul 2021
    Thanks sharing, I believe I have seen the github repo/paper before! Looks very interesting, I wonder if mantis could be used for expanding the functional annotation of sequences in the BiGG database (paper). This is the database that is used by CarveMe (paper) for building metabolic models from protein fasta files within the metaGEM workflow. I believe that CarveMe does not actually use the annotations themselves, but simply aligns sequences in a fasta file to the BiGG database, which contains associations between sequences -> genes -> reactions -> metabolites.

What are some alternatives?

When comparing DECA and carveme you can also consider the following projects:

Blender-Tools-for-DSCS - This repository provides a work-in-progress addon for Blender 2.8 that can (to some degree) import model files from the PC version of Digimon Story: Cyber Sleuth. It provides new options in File > Import and File > Export named "DSCS Model", which should be pointed towards 'name' files in the game data. The file format is mostly understood; but some bugs remain and there are some Blender issues yet to be understood. Also has experimental support for the PS4 version, and for Megido72.

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

vrn - :man: Code for "Large Pose 3D Face Reconstruction from a Single Image via Direct Volumetric CNN Regression"

ancient-microbiome-denovo

3DDFA_V2 - The official PyTorch implementation of Towards Fast, Accurate and Stable 3D Dense Face Alignment, ECCV 2020.

embl_gems - EMBL GEMs: A collection of GEnome-scale Models for bacterial species

facexlib - FaceXlib aims at providing ready-to-use face-related functions based on current STOA open-source methods.

StrayVisualizer - Visualize Data From Stray Scanner https://keke.dev/blog/2021/03/10/Stray-Scanner.html

learning-topology-synthetic-data - Tensorflow implementation of Learning Topology from Synthetic Data for Unsupervised Depth Completion (RAL 2021 & ICRA 2021)

deepdiff - DeepDiff: Deep Difference and search of any Python object/data. DeepHash: Hash of any object based on its contents. Delta: Use deltas to reconstruct objects by adding deltas together.

3DDFA - The PyTorch improved version of TPAMI 2017 paper: Face Alignment in Full Pose Range: A 3D Total Solution.

deviceidentifier-py - Utils to manipulate and learn from assorted device identifier formats via Reincubate's API.