DAGSfM VS foldseek

Compare DAGSfM vs foldseek and see what are their differences.

DAGSfM

Distributed and Graph-based Structure from Motion. This project includes the official implementation of our Pattern Recognition 2020 paper: Graph-Based Parallel Large Scale Structure from Motion. (by AIBluefisher)
Computer Vision structure-from-motion multi-view-geometry Sfm 3d-reconstruction Distributed Systems Graph Clustering Solver
Source Code
aibluefisher.github.io
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foldseek

Foldseek enables fast and sensitive comparisons of large structure sets. (by steineggerlab)
protein-structure alignments Bioinformatics Clustering
Source Code
foldseek.com
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DAGSfM foldseek
2 1
384 637
- 10.5%
0.0 9.3
almost 2 years ago 5 days ago
C C
BSD 3-clause "New" or "Revised" License GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

DAGSfM

Posts with mentions or reviews of DAGSfM. We have used some of these posts to build our list of alternatives and similar projects.

foldseek

Posts with mentions or reviews of foldseek. We have used some of these posts to build our list of alternatives and similar projects.
  • AI predicts shape of nearly every known protein
    1 project | news.ycombinator.com | 28 Jul 2022
    "Some sophisticated applications of the expanded AlphaFold database might also depend on downloading its entire 23 terabyte contents, which won’t be feasible for many teams, Steinegger says. Cloud-based storage could also prove costly. Steinegger has co-developed a software tool called FoldSeek that can quickly find structurally similar proteins and which should be able to squash the AlphaFold data down considerably."

    [FoldSeek Search](https://search.foldseek.com/search)

    [Github:FoldSeek](https://github.com/steineggerlab/foldseek)

What are some alternatives?

When comparing DAGSfM and foldseek you can also consider the following projects:

tinysfm - Structure From Motion in 50 lines using OpenCV

bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

Meshroom - 3D Reconstruction Software

hh-suite - Remote protein homology detection suite.

sundials - Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcome for bug fixes and minor changes.

MooseFS - MooseFS – Open Source, Petabyte, Fault-Tolerant, Highly Performing, Scalable Network Distributed File System (Software-Defined Storage)

OpenMVG (open Multiple View Geometry) - open Multiple View Geometry library. Basis for 3D computer vision and Structure from Motion.

mars - Asynchronous Block-Level Storage Replication

AliceVision - Photogrammetric Computer Vision Framework

seqtk - Toolkit for processing sequences in FASTA/Q formats

RedisJumphash - Google's "Jump" Consistent Hash function in C, as Redis module.

colmap - COLMAP - Structure-from-Motion and Multi-View Stereo

DAGSfM vs tinysfm foldseek vs bwa DAGSfM vs Meshroom foldseek vs hh-suite DAGSfM vs sundials foldseek vs MooseFS DAGSfM vs OpenMVG (open Multiple View Geometry) foldseek vs mars DAGSfM vs AliceVision foldseek vs seqtk DAGSfM vs RedisJumphash DAGSfM vs colmap