quantification

Open-source projects categorized as quantification
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Topics: 10x single-cell single-cell-rna-seq rna-seq Annotation
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Top 4 quantification Open-Source Projects

quantification

  • salmon

    🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment (by COMBINE-lab)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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  • alevin-fry

    🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.

  • mirdeep2

    Discovering known and novel miRNAs from small RNA sequencing data

  • reCOGnizer

    A tool for domain based annotation with databases from the Conserved Domains Database

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

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quantification related posts

  • Is there a way to achieve a similar COG annotation for Haloferax mediterranei?

    1 project | /r/bioinformatics | 10 Apr 2023

  • Is there a way to achieve a similar COG annotation for Haloferax mediterranei?

    1 project | /r/proteomics | 10 Apr 2023

  • Why do some HMMs come with a separate score table instead of embedding in as cut_ga, cut_tc, or cut_nc?

    1 project | /r/bioinformatics | 19 Jun 2022

  • Problems using Prokka

    2 projects | /r/bioinformatics | 29 Mar 2022

  • How would you name the program that does cog annotation?

    1 project | /r/AskReddit | 11 Mar 2022
  • A note from our sponsor - SaaSHub
    www.saashub.com | 16 Jun 2024
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Index

What are some of the best open-source quantification projects? This list will help you:

Project Stars
1 salmon 743
2 alevin-fry 154
3 mirdeep2 130
4 reCOGnizer 27

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