Top 4 metagenome Open-Source Projects

SqueezeMeta

1 335 6.6 C

A complete pipeline for metagenomic analysis
mag

2 182 9.5 Nextflow

Assembly and binning of metagenomes
InfluxDB

www.influxdata.com sponsored

Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
pyrodigal

1 121 8.9 Cython

Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

Project mention: DNA to amino acid sequence? | /r/bioinformatics | 2023-06-19

True! I believe bakta relies on this python implementation of prodigal for translation https://github.com/althonos/pyrodigal

MicrobiomeStat

1 24 9.7 R

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Project mention: Check out this awesome package for comprehensive and longitudinal microbiome analysis in R! | /r/bioinformatics | 2023-09-28

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).