Top 4 biomedical Open-Source Projects

• scispacy

  2 1,619 6.7 Python

  A full spaCy pipeline and models for scientific/biomedical documents.

  

• visual-med-alpaca

  2 342 6.0 Python

  Visual Med-Alpaca is an open-source, multi-modal foundation model designed specifically for the biomedical domain, built on the LLaMa-7B.

  

Project mention: Local medical LLM | /r/LocalLLaMA | 2023-06-09

• InfluxDB

  www.influxdata.com featured

  Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

  

• awesome-bioie

  1 300 2.1

  🧫 A curated list of resources relevant to doing Biomedical Information Extraction (including BioNLP)

Project mention: Snomed CT Entity Linking Challenge | news.ycombinator.com | 2023-12-22

> The objective of this competition is to link spans of text in clinical notes with specific topics in the SNOMED CT clinical terminology. Participants will train models based on real-world doctor's notes which have been de-identified and annotated with SNOMED CT concepts by medically trained professionals. This is the largest publicly available dataset of labelled clinical notes, and you can be one of the first to use it!

NER: Named Entity Recognition: https://en.wikipedia.org/wiki/Named-entity_recognition

awsome-medical-coding-nlp: https://github.com/acadTags/Awesome-medical-coding-NLP

awesome-ehr-deep-learning: https://github.com/hurcy/awesome-ehr-deeplearning

awesome-ner: https://github.com/smiyawaki0820/awesome-ner

awesome-bioie > Research groups: https://github.com/caufieldjh/awesome-bioie#groups-active-in...

SNOMED-CT as RDF: https://sphn-semantic-framework.readthedocs.io/en/latest/ext...

• typedb-bio

  1 73 4.6 Python

  TypeDB Bio: Biomedical Knowledge Graph

  

biomedical related posts

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• A note from our sponsor - SaaSHub
  www.saashub.com | 21 May 2024

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