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As you've mentioned, there are many papers on deep local feature extraction, like SuperPoint and R2D2. If you wish to use them in SLAM, you can simply replace the feature extraction module in the existing SLAM system with the deep local feature method. An example is shown here - this system uses SuperPoint as local features instead of ORB features in the original ORB-SLAM 2 pipeline. https://github.com/KinglittleQ/SuperPoint_SLAM
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