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While this would be a legal way to do it, I am not seeing anything in their repository indicating that. This looks like they manually decompiled it, cleaned up the results and published it in a form that can reproduce the original ROM.
Metroid Prime is already playable from beginning to end. Only catch is it requires a gamecube controller (Should work if you have a Gamecube -> USB adapter; preferably the Nintendo one, but if you have the Mayflash one set it to Wii u/Switch mode instead of PC mode) https://axiodl.com/
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.