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InfluxDB
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Since my course teachers mostly use presentation slides and provide them before the lesson, i use org-noter. It links the header in org with the page you are looking at on the slide, and when you need to study it synchronizes the views of the notes org file and the presentation pdf to show the slide linked with the note you are looking at (or vice versa) Sadly it seems dead, but it is still solid.
For more info on my workflow, you can check my config over on github. This part is specific to my org roam, references and general note taking workflow, so you won't have to look for the relevant parts. Its a literate config and I explain some things more than I do here. If this all interests you I suggest giving it a check. I also couldn't recommend Ahrens' book more. Its an incredible read for academics of every science as its really applicable everywhere imo.
You might be interested in tempel. Simple templates for Emacs
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Annotating pdfs and keeping track of your notes - app recommendations request
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Does anyone use ORG-NOTER with EPUB files and the NOV package?
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Is there a way to do digital handwritings in emacs?
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Is org-noter dead and what are its alternatives ?