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I remembered looking into this before. Seems like its been an issue for them for quite a while - you can see the open github issue here: https://github.com/orgzly/orgzly-android/issues/25
I don't really have good answers to your questions, but wanted to chime in anyway. I'm currently developing [org-roam-ui](https://github.com/org-roam/org-roam-ui) with the goal in mind to eventually fix 1 (and possibly 2).
Emacs is born as a human-computer interface, not specifically a PIM/PKM systems (Personal Information Management systems, Personal Knowledge Management systems), those are born at Xerox Parc and they never really took off, unfortunately. You can find a small intro like https://doi.org/10.1145/1480506.1480524 you can find many research articles and thesis on the ACM and other places, try https://karl-voit.at/tagstore/downloads/Voit2011.pdf by /u/publicvoit today in Emacs the most popular of such systems in org-roam, a wrapper/accessing tool for org-mode, witch is probably one of the most powerful, Memacs is another classic one that do something more and something less, Dimitri Gerasimov have it's own public HPI https://beepb00p.xyz/hpi.html with Grasp and Promnesia extensions for Emacs and probably many others do exists but they are used/developed by a small community and while in the "old" wiki book before, "personal note/evernote boom", now "zettelkasten boom" interest keep being there documentation especially at newcomer level is nearly zero... There are research papers, few whole books, tons of articles, but nothing like a complete and simple learning path...