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Onyx is an excellent "real-world" project for studying all of the things you've mentioned. It is large, well-tested, and well-structured. Confluent bought the company a few years ago, and so it isn't actively worked on, but it's still one of the best large Clojure codebases out there IMO
I wrote https://github.com/robert-stuttaford/bridge to help folks with this sort of learning goal :) Dev-diary blog posts are included for all commits!
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