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To the already excellent list I would like to add Zotero: https://www.zotero.org/
In case someone wants a cli tool for managing their paper library, I would suggest looking at papis. I am a zotero user and now I am slowly migrating to a terminal workflow using papis.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.
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