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First off you need to understand that there are many different Prologs. As a beginner though there is no reason to use any of them besides SWI-Prolog. It has a large community and tons of libraries. Make sure to make heavy use of the SWI-Prolog forums, the people there are very friendly and love helping people.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.