Is there a way to translate all ORFs on all contigs of a given bioproject on NCBI and write them all out as fasta?

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  • TransDecoder

    TransDecoder source

    • I believe Transdecoder (https://github.com/TransDecoder/TransDecoder/wiki) might help you. If you wanted to learn how to do this yourself, it's one of the Rosalind challenges (http://rosalind.info/problems/orf/) that I show how to solve in a new Python/bioinformatics book I'm releasing with O'Reilly. I'd be happy to share the first five chapters if you are curious. DM for details.

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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