TransDecoder

TransDecoder source (by TransDecoder)

Reviews and mentions

Posts with mentions or reviews of TransDecoder. We have used some of these posts to build our list of alternatives and similar projects.
  • Identifying protein coding genes from fna and gff files
  • Is there a way to translate all ORFs on all contigs of a given bioproject on NCBI and write them all out as fasta?
    I believe Transdecoder (https://github.com/TransDecoder/TransDecoder/wiki) might help you. If you wanted to learn how to do this yourself, it's one of the Rosalind challenges (http://rosalind.info/problems/orf/) that I show how to solve in a new Python/bioinformatics book I'm releasing with O'Reilly. I'd be happy to share the first five chapters if you are curious. DM for details.

Stats

Basic TransDecoder repo stats
2
159
1.7
3 months ago

TransDecoder/TransDecoder is an open source project licensed under GNU General Public License v3.0 or later which is an OSI approved license.

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