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EDPathFinder
A program that creates an optimal route that passes through two or more systems in Elite: Dangerous. Primarily focused on making settlement data point farming easier.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
EDDiscovery to help with exploration
EDPathfinder
EDDiscovery, EDDI and EDMC are commonly used tools. They also do lots of other things; the most lightweight variant for just uploading data is EDMC. They can also upload your stats, fleets, materials, discovered systems and whatnot to EDSM and Inara. Those are pretty handy sites, too.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.