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Take a look at Embox (https://github.com/embox/embox/wiki/USB-gadget-on-STM32 )
What I will say is that although it does indeed look like FTDI uses a slightly non-standard implementation of CDC, I think that you could modify, say, the tinyUSB CDC code to get the job done. If I had any bandwidth free on the horizon (I don't) I would make a little FTDI library myself. Maybe one day when I can take a breath...
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