synthetic-data-genomics
Proof of concept code from Gretel.ai and Illumina using generative neural networks to create synthetic versions of mouse genotype and phenotype data. (by gretelai)
DNA-Diffusion
🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨 (by pinellolab)
synthetic-data-genomics | DNA-Diffusion | |
---|---|---|
3 | 4 | |
32 | 335 | |
- | 2.7% | |
0.0 | 8.3 | |
over 2 years ago | 7 days ago | |
Jupyter Notebook | Jupyter Notebook | |
- | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
synthetic-data-genomics
Posts with mentions or reviews of synthetic-data-genomics.
We have used some of these posts to build our list of alternatives
and similar projects.
- Show HN: Synthetic Data Genomics
-
[P] Synthetic Data Genomics
This is the proof of concept code from a Gretel.ai & Illumina project that used generative neural networks to create synthetic versions of mouse genotype and phenotype data. https://github.com/gretelai/synthetic-data-genomics
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Using AI to create safe, synthetic datasets for genomics
The code in this repository uses Gretel.ai's synthetic data APIs to create synthetic (artificial) versions of real world mouse genotype and connected phenotype datasets. https://doi.org/10.1038/ng.3609. https://github.com/gretelai/synthetic-data-genomics
DNA-Diffusion
Posts with mentions or reviews of DNA-Diffusion.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-13.
- I was skeptical but THAT enormous negative prompt WORKS!!!!! (this hand is beautiful)
-
Coding guidance for reparameterization trick
See https://github.com/pinellolab/DNA-Diffusion/blob/dna-diffusion/notebooks/experiments/conditional_diffusion/dna_diff_baseline_conditional_UNET.ipynb
- The Stability AI pipeline summarized (including next week's releases)
What are some alternatives?
When comparing synthetic-data-genomics and DNA-Diffusion you can also consider the following projects:
genalog - Genalog is an open source, cross-platform python package allowing generation of synthetic document images with custom degradations and text alignment capabilities.
sd-image-processor - A simple service to expose StableDiffusion via message queue