nimpylib
biofast
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nimpylib
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Why I Use Nim instead of Python for Data Processing
Another nim & python thread that has not been mentioned yet here
https://news.ycombinator.com/item?id=28506531 - project allows creating pythonic bindings for your nim libraries pretty easily, which can be useful if you still want to write most of your toplevel code in python, but leverage nim's speed when it matters.
If you want to make your nim code even more "pythonic" there is a https://github.com/Yardanico/nimpylib, and for calling some python code from nim there is a https://github.com/yglukhov/nimpy
biofast
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Parsing huge files in Python
FYI: the python packages I mentioned earlier can all directly read gzip'd fastq files. See also this repo for examples.
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Does Rust Support Reading in FATSA files?
needletail is rated in the Heng Li benchmark (https://github.com/lh3/biofast/)
- Why I Use Nim instead of Python for Data Processing
What are some alternatives?
nimpy - Nim - Python bridge
nimtorch - PyTorch - Python + Nim
Primes - Prime Number Projects in C#/C++/Python
scikit-bio - scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
readfq - Fast multi-line FASTA/Q reader in several programming languages
boomer - Zoomer application for Linux
PrimesResult - The results of the Dave Plummer's Primes Drag Race
nim-playground-frontend - The front-end for https://play.nim-lang.org
viroiddb - A curated database of all available viroid-like RNA sequences
RecursiveFactorization.jl